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rifcsphigho2_01_scaffold_23458

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_23458_1
unknown

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comp(2..70)
-----------------
DNA (69bp)
protein (23aa)

This feature has no annotations

rifcsphigho2_01_scaffold_23458_2
AR5, Aenigmarchaeota, DPANN, Archaea

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214..882
-----------------
DNA (669bp)
protein (223aa)
FKBP-type peptidylprolyl isomerase; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] id=18248716 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
FKBP-type peptidylprolyl isomerase; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] Tax=AR5
slyD; FKBP-type peptidylprolyl isomerase
rifcsphigho2_01_scaffold_23458_3

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1152..2240
-----------------
DNA (1089bp)
protein (363aa)
cell division protein FtsZ 1 id=18248715 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU003360}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
Cell division protein FtsZ
rifcsphigho2_01_scaffold_23458_4
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

2360..2536
-----------------
DNA (177bp)
protein (59aa)
SecE-related protein; K07342 protein transport protein SEC61 subunit gamma and related proteins id=18248714 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
SecE-related protein; K07342 protein transport protein SEC61 subunit gamma and related proteins Tax=AR5
rifcsphigho2_01_scaffold_23458_5
AR5, Aenigmarchaeota, DPANN, Archaea

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2541..2984
-----------------
DNA (444bp)
protein (148aa)
Transcription antiterminator id=4367356 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
NusG antitermination factor; K02601 transcriptional antiterminator NusG Tax=AR5
ribosomal protein L24p/L26e, archaeal
rifcsphigho2_01_scaffold_23458_6
unknown

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2986..3165
-----------------
DNA (180bp)
protein (60aa)

This feature has no annotations

rifcsphigho2_01_scaffold_23458_7

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3171..3647
-----------------
DNA (477bp)
protein (159aa)
50S ribosomal protein L11P id=4367357 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
50S ribosomal protein L11
rifcsphigho2_01_scaffold_23458_8

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comp(3654..4157)
-----------------
DNA (504bp)
protein (168aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AKK8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKN93544.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
membrane protein
rifcsphigho2_01_scaffold_23458_9
unknown

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comp(4160..4558)
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

rifcsphigho2_01_scaffold_23458_10
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists


4703..5308
-----------------
DNA (606bp)
protein (202aa)
rpl1P; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 id=5042998 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
rpl1P; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=AR5
50S ribosomal protein L1
rifcsphigho2_01_scaffold_23458_11

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5301..6155
-----------------
DNA (855bp)
protein (285aa)
Acidic ribosomal protein P0 homolog id=4367360 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00280}; Acidic ribosomal protein P0 homolog {ECO:0000256|HAMAP-Rule:MF_00280}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
50S ribosomal protein L10
rifcsphigho2_01_scaffold_23458_12
Methanotorris formicicus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

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6160..6468
-----------------
DNA (309bp)
protein (103aa)
50S ribosomal protein L12 n=1 Tax=Methanotorris formicicus Mc-S-70 RepID=H1KZ08_9EURY
50S ribosomal protein L12 {ECO:0000256|HAMAP-Rule:MF_01478}; TaxID=647171 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris.;" source="Methanotorris
rpl12p; 50S ribosomal protein L12
rifcsphigho2_01_scaffold_23458_13
CG_Aenigma_01, Aenigmaarchaeota, Archaea

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6637..8604
-----------------
DNA (1968bp)
protein (656aa)
alaS; alanyl-tRNA ligase (EC:6.1.1.7) Tax=CG_Aenigma_01
alaS; alanine--tRNA ligase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=uncultured archaeon RepID=G3C9G0_9ARCH
rifcsphigho2_01_scaffold_23458_14
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

8616..9299
-----------------
DNA (684bp)
protein (228aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=18248706 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=AR5
Suspect SCG annotation. See neighboring gene [rifcsphigho2_01_scaffold_23458_13].
alanyl-tRNA synthetase
rifcsphigho2_01_scaffold_23458_15
unknown

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9296..9532
-----------------
DNA (237bp)
protein (79aa)

This feature has no annotations

rifcsphigho2_01_scaffold_23458_16
unknown

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comp(9510..9794)
-----------------
DNA (285bp)
protein (95aa)

This feature has no annotations

rifcsphigho2_01_scaffold_23458_17
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

comp(9819..10283)
-----------------
DNA (465bp)
protein (155aa)
seg id=18248704 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
seg Tax=AR5
rifcsphigho2_01_scaffold_23458_18
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

comp(10285..10794)
-----------------
DNA (510bp)
protein (170aa)
NUDIX hydrolase id=5043006 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
ADP-ribose pyrophosphatase Tax=AR5
hypothetical protein
rifcsphigho2_01_scaffold_23458_19

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comp(10791..11438)
-----------------
DNA (648bp)
protein (216aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F1G3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE11829.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
peptidase S51 dipeptidase E
rifcsphigho2_01_scaffold_23458_20
unknown

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comp(11668..11802)
-----------------
DNA (135bp)
protein (45aa)

This feature has no annotations

rifcsphigho2_01_scaffold_23458_21
PER_GWC2_41_7, PER_GWC2_41_7, PER_GWC2_41_7, PER_GWC2_41_7, Peregrinibacteria, Bacteria

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comp(11811..12671)
-----------------
DNA (861bp)
protein (287aa)
id=4922280 bin=PER_GWC2_41_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
id=4922280 bin=PER_GWC2_41_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsphigho2_01_scaffold_23458_22
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

comp(12746..12979)
-----------------
DNA (234bp)
protein (78aa)
alias=gwa2_scaffold_241_11 id=18248700 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
alias=gwa2_scaffold_241_11 Tax=AR5
rifcsphigho2_01_scaffold_23458_23

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comp(12989..13519)
-----------------
DNA (531bp)
protein (177aa)
DJ-1/PfpI family protein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BYS5_METCG
Marine sediment metagenome DNA, contig: S03H2_S02479 {ECO:0000313|EMBL:GAH61157.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
DJ-1/PfpI family protein
rifcsphigho2_01_scaffold_23458_24
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

13585..14010
-----------------
DNA (426bp)
protein (142aa)
Uncharacterized protein id=18248699 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Uncharacterized protein Tax=AR5
hypothetical protein
rifcsphigho2_01_scaffold_23458_25
unknown

Not on your lists

14134..14373
-----------------
DNA (240bp)
protein (80aa)

This feature has no annotations

rifcsphigho2_01_scaffold_23458_26
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

comp(14687..15217)
-----------------
DNA (531bp)
protein (177aa)
alias=gwa2_scaffold_241_13 id=18248698 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
alias=gwa2_scaffold_241_13 Tax=AR5
rifcsphigho2_01_scaffold_23458_27
unknown

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comp(15195..15305)
-----------------
DNA (111bp)
protein (37aa)

This feature has no annotations

rifcsphigho2_01_scaffold_23458_28
unknown

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comp(15401..15514)
-----------------
DNA (114bp)
protein (38aa)

This feature has no annotations

Displaying 28 items

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