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rifcsphigho2_01_scaffold_32392

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_32392_1
unknown

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3..299
-----------------
DNA (297bp)
protein (99aa)

This feature has no annotations

rifcsphigho2_01_scaffold_32392_2
AR11, Woesearchaeaota, DPANN, Archaea

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comp(312..521)
-----------------
DNA (210bp)
protein (70aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003680DED
hypothetical protein Tax=AR11
rifcsphigho2_01_scaffold_32392_3
unknown

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comp(532..744)
-----------------
DNA (213bp)
protein (71aa)

This feature has no annotations

rifcsphigho2_01_scaffold_32392_4
AR5, Aenigmarchaeota, DPANN, Archaea

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901..1602
-----------------
DNA (702bp)
protein (234aa)
ribosome maturation protein SBDS; K14574 ribosome maturation protein SDO1 id=5044444 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
ribosome maturation protein SBDS; K14574 ribosome maturation protein SDO1 Tax=AR5
ribosome maturation protein SBDS
rifcsphigho2_01_scaffold_32392_5
AR5, Aenigmarchaeota, DPANN, Archaea

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1642..2328
-----------------
DNA (687bp)
protein (229aa)
exosome complex RNA-binding protein Rrp4; K03679 exosome complex component RRP4 id=18248378 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
exosome complex RNA-binding protein Rrp4; K03679 exosome complex component RRP4 Tax=AR5
exosome complex RNA-binding protein 1
rifcsphigho2_01_scaffold_32392_6

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2340..3092
-----------------
DNA (753bp)
protein (251aa)
exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 id=5044446 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Exosome complex component RRP41 {ECO:0000313|EMBL:KHO48382.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
exosome complex exonuclease Rrp41
rifcsphigho2_01_scaffold_32392_7
AR5, Aenigmarchaeota, DPANN, Archaea

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3085..3879
-----------------
DNA (795bp)
protein (265aa)
3' exoribonuclease; K12589 exosome complex component RRP42 id=18248380 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
3' exoribonuclease; K12589 exosome complex component RRP42 Tax=AR5
Ribosomal RNA-processing protein RRP42
rifcsphigho2_01_scaffold_32392_8
unknown

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comp(3910..4194)
-----------------
DNA (285bp)
protein (95aa)

This feature has no annotations

rifcsphigho2_01_scaffold_32392_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(4271..4786)
-----------------
DNA (516bp)
protein (172aa)
Nuclear protein SET n=1 Tax=uncultured bacterium RepID=K2DZW4_9BACT
nuclear protein SET Tax=RBG_16_Euryarchaeota_41_19_curated
nuclear protein SET
rifcsphigho2_01_scaffold_32392_10
AR5, Aenigmarchaeota, DPANN, Archaea

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4851..5753
-----------------
DNA (903bp)
protein (301aa)
hypothetical protein; K07561 diphthamide synthase subunit DPH2 id=5044452 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
hypothetical protein; K07561 diphthamide synthase subunit DPH2 Tax=AR5
diphthine synthase, DPH2 subunit
rifcsphigho2_01_scaffold_32392_11
AR5, Aenigmarchaeota, DPANN, Archaea

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5753..6013
-----------------
DNA (261bp)
protein (87aa)
alias=gwa2_scaffold_521_196 id=18248390 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
alias=gwa2_scaffold_521_196 Tax=AR5
rifcsphigho2_01_scaffold_32392_12
unknown

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6028..6216
-----------------
DNA (189bp)
protein (63aa)

This feature has no annotations

rifcsphigho2_01_scaffold_32392_13
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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6241..6855
-----------------
DNA (615bp)
protein (205aa)
UPF0215 protein Mfer_1016 n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GW46_METFV
hypothetical protein
UPF0215 protein Mfer_1016 {ECO:0000256|HAMAP-Rule:MF_00582}; TaxID=523846 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methanothermus.;" source="Methanother
rifcsphigho2_01_scaffold_32392_14

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7120..7647
-----------------
DNA (528bp)
protein (176aa)
hypothetical protein
id=4918931 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Signal peptidase I {ECO:0000313|EMBL:KHO48394.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
rifcsphigho2_01_scaffold_32392_15
unknown

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comp(7649..8035)
-----------------
DNA (387bp)
protein (129aa)

This feature has no annotations

rifcsphigho2_01_scaffold_32392_16

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8502..8951
-----------------
DNA (450bp)
protein (150aa)
Transcriptional regulator, AsnC family id=4186604 bin=GWC2_Deltaproteobacteria_56_8 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
AsnC family transcriptional regulator {ECO:0000313|EMBL:KHO46758.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Transcriptional regulator, lrp family
rifcsphigho2_01_scaffold_32392_17
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(8948..10213)
-----------------
DNA (1266bp)
protein (422aa)
L-asparaginase, type I n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S0P8_THEOJ
type I L-asparaginase
L-asparaginase, type I {ECO:0000313|EMBL:ADL08906.1}; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermosediminib
rifcsphigho2_01_scaffold_32392_18
unknown

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comp(10288..10638)
-----------------
DNA (351bp)
protein (117aa)

This feature has no annotations

Displaying 18 items

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