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RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_1
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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3..305
DNA (303bp) protein (101aa)
signal peptide protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002F6B246
diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_2
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

610..3435
DNA (2826bp) protein (942aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B6F6_9PROT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_3
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3464..3799)
DNA (336bp) protein (112aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Uncharacterized protein id=4412601 bin=GWF2_Melainabacteria_37_15 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWF2_Melainabacteria_37_15 organism_group=Melainabacteria
hypothetical protein
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_4
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3796..5274)
DNA (1479bp) protein (493aa)
lpdA2; dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
lpdA2; dihydrolipoamide dehydrogenase (EC:1.8.1.4)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003820C0D
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_5
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5480..6793)
DNA (1314bp) protein (438aa)
Dihydrolipoamide acetyltransferase n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G3U9_9GAMM
2-oxoglutarate dehydrogenase E2 Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
2-oxoglutarate dehydrogenase E2
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_6
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6812..9676)
DNA (2865bp) protein (955aa)
alpha-ketoglutarate decarboxylase; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
sucA; 2-oxoglutarate dehydrogenase (EC:1.2.4.2)
Alpha-ketoglutarate decarboxylase n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G3U8_9GAMM
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_7
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9847..10488)
DNA (642bp) protein (214aa)
dsba oxidoreductase; K03673 thiol:disulfide interchange protein DsbA Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Thiol:disulfide interchange protein DsbA id=1348379 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
dsba oxidoreductase
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_8
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10667..12076)
DNA (1410bp) protein (470aa)
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; K02558 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-] Tax=RIFCSPHIGHO2_12_FULL_Gam
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLH0_THISH
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_9
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12076..12573)
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) RepID=Q3J8P0_NITOC
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_10
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12732..13187)
DNA (456bp) protein (152aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_11
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13267..14436
DNA (1170bp) protein (390aa)
ribonuclease D (EC:3.1.13.5); K03684 ribonuclease D [EC:3.1.13.5] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ribonuclease D (EC:3.1.13.5)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037A3B77
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_12
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14487..15350
DNA (864bp) protein (288aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_13
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15577..16797)
DNA (1221bp) protein (407aa)
membrane-bound lytic murein transglycosylase A; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
murein transglycosylase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003614537
membrane-bound lytic murein transglycosylase A
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_14
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16846..17592
DNA (747bp) protein (249aa)
putative permease Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
putative permease id=14632078 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin9_gal15 organism_group=GAL15
putative permease
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_15
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17691..20024)
DNA (2334bp) protein (778aa)
topA; DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
topA; DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BG45_9GAMM
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_16
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20204..20686)
DNA (483bp) protein (161aa)
Protein Smg homolog n=3 Tax=Nitrosococcus RepID=SMG_NITOC
hypothetical protein; K03747 Smg protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_17
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20715..21875)
DNA (1161bp) protein (387aa)
DNA protecting protein DprA n=2 Tax=Nitrosococcus oceani RepID=Q3J6U2_NITOC
SMF protein; K04096 DNA processing protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
SMF protein
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_18
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21910..23031)
DNA (1122bp) protein (374aa)
LysM domain protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5G3_9GAMM
peptidoglycan-binding LysM Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
peptidoglycan-binding LysM
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_19
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23198..23701
DNA (504bp) protein (168aa)
def_[H]; Peptide deformylase (EC:3.5.1.88) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
def_[H]; Peptide deformylase (EC:3.5.1.88)
peptide deformylase n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000360F86F
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_20
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23819..24769
DNA (951bp) protein (317aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Methionyl-tRNA formyltransferase n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8YX82_9GAMM
methionyl-tRNA formyltransferase
RIFCSPHIGHO2_01_FULL_Gammaproteobacteria_61_200_rifcsphigho2_01_scaffold_3434_21
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24744..25919
DNA (1176bp) protein (392aa)
16S rRNA methyltransferase B n=1 Tax=Pseudomonas stutzeri KOS6 RepID=K6D1K1_PSEST
16S rRNA methyltransferase B Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
16S rRNA methyltransferase B
Displaying 21 items

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