ggKbase home page
This organism can only be binned in the context of its binning project GWA2. Please contact the project owner (jbanfield@berkeley.edu) to become a member and gain access.

RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_1
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

153..596
-----------------
DNA (444bp)
protein (148aa)
Protein MraZ id=5226998 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Protein mraZ
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_2
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

598..1509
-----------------
DNA (912bp)
protein (304aa)
mraW; S-adenosyl-methyltransferase MraW (EC:2.1.1.-); K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] id=5803433 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
S-adenosyl-methyltransferase MraW
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_3
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

1554..1919
-----------------
DNA (366bp)
protein (122aa)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_4
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

1923..3635
-----------------
DNA (1713bp)
protein (571aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
id=5227001 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_5
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

3668..4975
-----------------
DNA (1308bp)
protein (436aa)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] id=5803436 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_6
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

5375..5758
-----------------
DNA (384bp)
protein (128aa)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_7
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(5782..6825)
-----------------
DNA (1044bp)
protein (348aa)
Putative DNA recombination protein id=5227193 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_8
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(6986..7702)
-----------------
DNA (717bp)
protein (239aa)
Exonuclease RNase T and DNA polymerase III id=5227192 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Exonuclease RNase T and DNA polymerase III
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_9
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

7849..8298
-----------------
DNA (450bp)
protein (150aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PW87_9BACT
GatB/YqeY domain-containing protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_10
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

8304..8909
-----------------
DNA (606bp)
protein (202aa)
hypothetical protein id=2807 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_11
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

8893..9870
-----------------
DNA (978bp)
protein (326aa)
hypothetical protein id=5227189 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
putative uncharacterized protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_12
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

10025..11068
-----------------
DNA (1044bp)
protein (348aa)
GTPase ObgE n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWC7_9BACT
GTP-binding protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_13
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

11106..12536
-----------------
DNA (1431bp)
protein (477aa)
id=5227058 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_14
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

12542..13417
-----------------
DNA (876bp)
protein (292aa)
Ketose-bisphosphate aldolase, class-II (Fragment) id=5227050 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Tagatose-bisphosphate aldolase
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_15
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

13430..15238
-----------------
DNA (1809bp)
protein (603aa)
hypothetical protein n=1 Tax=Candidatus Microgenomatus auricola SCGC AAA011-E14 RepID=UPI000372C354
Oxidoreductase
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_16
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists


15262..15936
-----------------
DNA (675bp)
protein (225aa)
50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 id=5227043 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
ctc; 50S ribosomal protein L25/general stress protein Ctc
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_17
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

15981..17333
-----------------
DNA (1353bp)
protein (451aa)
hypothetical protein id=5227042 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_18
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists


17379..17597
-----------------
DNA (219bp)
protein (73aa)
50S ribosomal protein L31 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVU1_9BACT
rpmE; 50S ribosomal protein L31 RpmE
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_19
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

17740..18705
-----------------
DNA (966bp)
protein (322aa)
id=5227040 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
peptide chain release factor 1
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_5808_20
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

18890..19213
-----------------
DNA (324bp)
protein (108aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1XTU5_9BACT
RNP-1 like RNA-binding protein
Displaying 20 items

View Taxonomy