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RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_1
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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279..1811
-----------------
DNA (1533bp)
protein (511aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWR2_9BACT
metal dependent phosphohydrolase
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_2
R_OD1_Nomurabacteria_39_18, Nomurabacteria, Parcubacteria, Bacteria

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1859..2206
-----------------
DNA (348bp)
protein (116aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PY42_9BACT
hupB; DNA-binding protein Hu-beta
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_3
R_OD1_Nomurabacteria_37_25, Nomurabacteria, Parcubacteria, Bacteria

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comp(2347..2913)
-----------------
DNA (567bp)
protein (189aa)
DNA polymerase V subunit; K03503 DNA polymerase V [EC:3.4.21.-] id=5091491 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
DNA polymerase V subunit
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_4
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(3311..4912)
-----------------
DNA (1602bp)
protein (534aa)
id=5227380 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Mg chelatase-like protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_5
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(5018..5374)
-----------------
DNA (357bp)
protein (119aa)
TraR/DksA family transcriptional regulator n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZI6_9BACT
TraR/DksA family transcriptional regulator
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_6
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(5456..6358)
-----------------
DNA (903bp)
protein (301aa)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_7
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(6345..8471)
-----------------
DNA (2127bp)
protein (709aa)
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] id=5803178 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
polyribonucleotide nucleotidyltransferase
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_8
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(8801..9307)
-----------------
DNA (507bp)
protein (169aa)
Uncharacterized protein id=5227376 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_9
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(9462..9725)
-----------------
DNA (264bp)
protein (88aa)
BSCG--ribosomal--protein--S15
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 id=5227375 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
30S ribosomal protein S15
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_10
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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9839..10774
-----------------
DNA (936bp)
protein (312aa)
recombinase; K04763 integrase/recombinase XerD id=5803170 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Tyrosine recombinase XerD
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_11
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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10939..11718
-----------------
DNA (780bp)
protein (260aa)
Exodeoxyribonuclease III n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWR6_9BACT
xthA; exodeoxyribonuclease III
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_12
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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11841..12464
-----------------
DNA (624bp)
protein (208aa)
Putative uncharacterized protein id=5226941 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_13
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(12461..13246)
-----------------
DNA (786bp)
protein (262aa)
Transcriptional regulator, TrmB n=1 Tax=uncultured bacterium RepID=K2FC11_9BACT
iclR helix-turn-helix domain protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_14
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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13396..13977
-----------------
DNA (582bp)
protein (194aa)
Multidrug resistance protein MdtK n=1 Tax=Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9) RepID=F5YA22_TREAZ
multidrug resistance protein MdtK
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_15
GWA1_OD1_37_20_partial, Nomurabacteria, Parcubacteria, Bacteria

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13983..15662
-----------------
DNA (1680bp)
protein (560aa)
hypothetical protein id=5098323 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_16
unknown

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15719..15823
-----------------
DNA (105bp)
protein (35aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_17
unknown

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15859..16197
-----------------
DNA (339bp)
protein (113aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_18
GWB1_OD1_40_7, Nomurabacteria, Parcubacteria, Bacteria

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comp(16210..16467)
-----------------
DNA (258bp)
protein (86aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2D814_9BACT
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_19
R_OD1_Nomurabacteria_40_18, Nomurabacteria, Parcubacteria, Bacteria

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comp(16469..16735)
-----------------
DNA (267bp)
protein (89aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B75A65
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_20
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

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comp(16772..18382)
-----------------
DNA (1611bp)
protein (537aa)
tRNA adenylyltransferase/tRNA cytidylyltransferase (EC:2.7.7.25 2.7.7.21)
id=5227370 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_21
R_OD1_Nomurabacteria_37_25, Nomurabacteria, Parcubacteria, Bacteria

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18942..19349
-----------------
DNA (408bp)
protein (136aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZH9_9BACT
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_22
R_OD1_Nomurabacteria_41_18, Nomurabacteria, Parcubacteria, Bacteria

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19476..19874
-----------------
DNA (399bp)
protein (133aa)
transmembrane_regions 7..25 id=120602 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_23
R_OD1_Nomurabacteria_46_18, Nomurabacteria, Parcubacteria, Bacteria

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19914..20381
-----------------
DNA (468bp)
protein (156aa)
hypothetical protein
transmembrane_regions 5..27 id=120601 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_24
GWB1_OD1_54_7, Adlerbacteria, Parcubacteria, Bacteria

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comp(20496..20912)
-----------------
DNA (417bp)
protein (139aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003748160
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_25
GWF2_OD1_46_218, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

20927..21472
-----------------
DNA (546bp)
protein (182aa)
Metal dependent phosphohydrolase id=1995456 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_26
unknown

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21475..22104
-----------------
DNA (630bp)
protein (210aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_27
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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22110..23195
-----------------
DNA (1086bp)
protein (362aa)
ATP-dependent Zn protease id=3707950 bin=GWF2_Lentisphaerae_49_21 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_28
R_OD1_Nomurabacteria_36_29, Nomurabacteria, Parcubacteria, Bacteria

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comp(23666..24724)
-----------------
DNA (1059bp)
protein (353aa)
peptidase M23 family protein id=5803183 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_12028_29
unknown

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24795..24887
-----------------
DNA (93bp)
protein (31aa)

This feature has no annotations

Displaying 29 items

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