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RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_1
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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283..2055
-----------------
DNA (1773bp)
protein (591aa)
Uncharacterized protein (Fragment) id=2899562 bin=GWA1_ZB2_49_26 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_2
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

2082..2456
-----------------
DNA (375bp)
protein (125aa)
id=2899561 bin=GWA1_ZB2_49_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_3
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

2531..3889
-----------------
DNA (1359bp)
protein (453aa)
transmembrane_regions id=5226885 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_4
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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3963..4325
-----------------
DNA (363bp)
protein (121aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BWW0_9GAMM id=130483 bin=ACD7 species=Beggiatoa sp. PS genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
S23 ribosomal protein
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_5
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

comp(4657..5937)
-----------------
DNA (1281bp)
protein (427aa)
Retron-type reverse transcriptase id=2169465 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Retron-type reverse transcriptase
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_6
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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6107..6631
-----------------
DNA (525bp)
protein (175aa)
Transposase n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UVJ0_CLOBO id=96731 bin=ACD63 species=Clostridium botulinum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
transposase
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_7
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

7204..7806
-----------------
DNA (603bp)
protein (201aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PY45_9BACT
transcriptional regulator
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_8

Not on your lists

7987..8691
-----------------
DNA (705bp)
protein (235aa)
Small-conductance mechanosensitive ion channel-like protein id=5226871 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
TM helix protein
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_9
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

8813..10057
-----------------
DNA (1245bp)
protein (415aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B37C98
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_10
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(10400..10708)
-----------------
DNA (309bp)
protein (103aa)
hypothetical protein; K09131 hypothetical protein id=5803615 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_11
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(10776..11711)
-----------------
DNA (936bp)
protein (312aa)
Peptidase M10A and M12B matrixin and adamalysin id=1831174 bin=GWA2_Elusimicrobia_51_34 species=Acinetobacter pittii genus=Acinetobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
matrixin superfamily
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_12
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(11779..13452)
-----------------
DNA (1674bp)
protein (558aa)
general secretion pathway protein G; K02456 general secretion pathway protein G id=6090 bin=ACD13 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_13
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(13470..13613)
-----------------
DNA (144bp)
protein (48aa)
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_14
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(13650..13964)
-----------------
DNA (315bp)
protein (105aa)
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_15
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(14266..14460)
-----------------
DNA (195bp)
protein (65aa)
Integrase core domain protein n=1 Tax=Neisseria sicca ATCC 29256 RepID=C6M834_NEISI
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_16
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

14508..15251
-----------------
DNA (744bp)
protein (248aa)
Uncharacterized protein n=1 Tax=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) RepID=A7HM60_FERNB
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_17
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

15248..16411
-----------------
DNA (1164bp)
protein (388aa)
Lipoprotein, putative n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9H3F9_9SPHI
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_18
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

16534..16923
-----------------
DNA (390bp)
protein (130aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=I8XNS0_9BACE
putative diacylglycerol kinase
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_19
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

16932..17324
-----------------
DNA (393bp)
protein (131aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037ADF7A
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_20
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

17438..17986
-----------------
DNA (549bp)
protein (183aa)
Disulfide bond formation protein DsbB n=1 Tax=uncultured bacterium RepID=K2ECC3_9BACT
disulfide bond formation protein DsbB
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_21
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists


18077..18433
-----------------
DNA (357bp)
protein (119aa)
BSCG--ribosomal--protein--S19
30S ribosomal protein S19 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZF6_9BACT
rpsS; ribosomal protein S19 (BS19)
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_22
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists


18561..18965
-----------------
DNA (405bp)
protein (135aa)
BSCG--ribosomal--protein--L22
50S ribosomal protein L22 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWS5_9BACT
rplV; 50S ribosomal protein L22
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_23

Not on your lists


18967..19632
-----------------
DNA (666bp)
protein (222aa)
BSCG--ribosomal--protein--S3
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GQ93_9ZZZZ
rpsC; 30S ribosomal protein S3
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_24
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists


19708..20136
-----------------
DNA (429bp)
protein (143aa)
BSCG--ribosomal--protein--L16--L10E
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 id=5227346 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
rplP; 50S ribosomal protein L16
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_25
R_OD1_Nomurabacteria_40_18, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

20244..20387
-----------------
DNA (144bp)
protein (48aa)
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_26
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists


20389..20646
-----------------
DNA (258bp)
protein (86aa)
BSCG--ribosomal--protein--S17
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 id=5803320 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rpsQ; 30S ribosomal protein S17
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_27

Not on your lists


20643..21014
-----------------
DNA (372bp)
protein (124aa)
BSCG--ribosomal--protein--L14
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 id=5227344 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
rplN; 50S ribosomal protein L14
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_28
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists


21043..21258
-----------------
DNA (216bp)
protein (72aa)
BSCG--ribosomal--protein--L24
50S ribosomal protein L24 n=1 Tax=Mycoplasma sp. CAG:776 RepID=R7NG34_9MOLU
rplX; 50S ribosomal subunit protein L24
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_29
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists


21314..21877
-----------------
DNA (564bp)
protein (188aa)
BSCG--ribosomal--protein--L5
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5227342 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
rplE; 50S ribosomal protein L5
RIFCSPHIGHO2_01_FULL_OD1_39_220_rifcsphigho2_01_scaffold_2232_30
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

22108..22293
-----------------
DNA (186bp)
protein (62aa)
Displaying items 1-30 of 41 in total

View Taxonomy