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RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_18483

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_18483_1
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(116..352)
-----------------
DNA (237bp)
protein (79aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_18483_2
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(441..917)
-----------------
DNA (477bp)
protein (159aa)
NUDIX hydrolase Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
NUDIX hydrolase id=4948077 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_18483_3
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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1157..2197
-----------------
DNA (1041bp)
protein (347aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T3S6_THEA1
two component, sigma54 specific, transcriptional regulator, Fis family; K02667 two-component system, NtrC family, response regulator PilR Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
two component, sigma54 specific, transcriptional regulator, Fis family
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_18483_4
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(2248..2901)
-----------------
DNA (654bp)
protein (218aa)
hypothetical protein n=1 Tax=Microgenomates bacterium SCGC AAA040-P11 RepID=UPI0003703FFF
putative amidophosphoribosyltransferase Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
putative amidophosphoribosyltransferase
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_18483_5
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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2936..4057
-----------------
DNA (1122bp)
protein (374aa)
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM id=5803086 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type IV pilus assembly protein PilM
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_18483_6
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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4083..4631
-----------------
DNA (549bp)
protein (183aa)
transmembrane_regions Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
transmembrane_regions id=5227303 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_18483_7
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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4631..5200
-----------------
DNA (570bp)
protein (190aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_18483_8
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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5204..5488
-----------------
DNA (285bp)
protein (95aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_18483_9
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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5495..7219
-----------------
DNA (1725bp)
protein (575aa)
putative type II secretion system protein E Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
general secretion pathway protein E id=5803081 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_18483_10
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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7241..7618
-----------------
DNA (378bp)
protein (126aa)
Response regulator receiver protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZB0_9BACT
putative two-component system response regulatory protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Two component transcriptional regulator, winged helix
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_18483_11
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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7623..8708
-----------------
DNA (1086bp)
protein (362aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000373007F
pilT; twitching motility protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
twitching motility protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_18483_12
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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8708..9928
-----------------
DNA (1221bp)
protein (407aa)
type II secretion system protein; K02653 type IV pilus assembly protein PilC Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Type II secretion system F domain; K02653 type IV pilus assembly protein PilC id=5803078 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type II secretion system protein
Displaying 12 items

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