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RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_1
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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3..1361
-----------------
DNA (1359bp)
protein (453aa)
rny; ribonuclease Y (EC:3.1.-.-) Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC:3.1.4.16)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWR2_9BACT
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_2
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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1436..1723
-----------------
DNA (288bp)
protein (96aa)
hbs; non-specific DNA-binding protein HBsu; K03530 DNA-binding protein HU-beta Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
nucleoid DNA-binding protein HU-beta; K03530 DNA-binding protein HU-beta id=5803144 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA-binding protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_3
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(1805..2554)
-----------------
DNA (750bp)
protein (250aa)
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GF13_9FIRM
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_4
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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2645..2839
-----------------
DNA (195bp)
protein (65aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_5
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(2966..3154)
-----------------
DNA (189bp)
protein (63aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI000363EA85
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_6
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(3205..3972)
-----------------
DNA (768bp)
protein (256aa)
ABC transporter, inner membrane subunit n=1 Tax=Reinekea blandensis MED297 RepID=A4BH89_9GAMM id=68473 bin=ACD48 species=Reinekea blandensis genus=Reinekea taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=ACD48 organism_group=OP11 (Microgenomates) organism_desc=OP11
ABC transporter; K09686 antibiotic transport system permease protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
ABC transporter
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_7
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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4055..4576
-----------------
DNA (522bp)
protein (174aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_8
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(4639..4899)
-----------------
DNA (261bp)
protein (87aa)
translation repressor RelE n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B36E24
translation repressor RelE Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_9
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(4896..5171)
-----------------
DNA (276bp)
protein (92aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CGH2_9BACT
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_10
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(5197..5958)
-----------------
DNA (762bp)
protein (254aa)
ABC transporter ATP-binding protein; K09687 antibiotic transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
ABC transporter related protein; K09687 antibiotic transport system ATP-binding protein id=68474 bin=ACD48 species=ACD48 genus=ACD48 taxon_order=ACD48 taxon_class=ACD48 phylum=OP11 tax=ACD48 organism_group=OP11 (Microgenomates) organism_desc=OP11
ABC transporter ATP-binding protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_11
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(5996..6736)
-----------------
DNA (741bp)
protein (247aa)
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Uncharacterized protein id=5095399 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_12
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(6726..7226)
-----------------
DNA (501bp)
protein (167aa)
RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RNA polymerase sigma factor, sigma-70 family id=15190917 bin=GWC1_OP11_49_16_COMPLETE species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
RNA polymerase sigma70 factor
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_13
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(7417..7794)
-----------------
DNA (378bp)
protein (126aa)
hypothetical protein; K07460 putative endonuclease Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
UPF0102 protein HMPREF0072_1985 id=4209728 bin=GWF2_Planctomycetes_42_9 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_14
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(7890..8444)
-----------------
DNA (555bp)
protein (185aa)
exonuclease; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
DNA polymerase III epsilon subunit n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08PT9_STIAD
exonuclease
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_15
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(8572..8772)
-----------------
DNA (201bp)
protein (67aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_16
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(9061..10584)
-----------------
DNA (1524bp)
protein (508aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Putative uncharacterized protein id=1891966 bin=GWD2_Chloroflexi_49_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_14697_17
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(10905..11426)
-----------------
DNA (522bp)
protein (174aa)
bpo:BP951000_0805 polyA polymerase family protein; K00970 poly(A) polymerase [EC:2.7.7.19] id=3345208 bin=GWC1_OD1_38_17 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
polynucleotide adenylyltransferase/metal dependent phosphohydrolase Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RNA nucleotidyltransferase
Displaying 17 items

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