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RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598

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Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_1
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(53..661)
-----------------
DNA (609bp)
protein (203aa)
recR; recombination protein RecR; K06187 recombination protein RecR Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
recR; recombination protein RecR; K06187 recombination protein RecR id=5227071 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
recR; recombination protein RecR
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_2
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(654..2060)
-----------------
DNA (1407bp)
protein (469aa)
dnaB; replicative DNA helicase (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
dnaB; replicative DNA helicase (EC:3.6.1.-)
Primary replicative DNA helicase id=3544264 bin=GWA1_ZB2_49_26 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_3
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(2126..3442)
-----------------
DNA (1317bp)
protein (439aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase id=4948080 bin=GWC2_OD1_43_27 species=ACD30 genus=ACD30 taxon_order=ACD30 taxon_class=ACD30 phylum=OP11 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_4
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(3452..4303)
-----------------
DNA (852bp)
protein (284aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Putative uncharacterized protein id=2655079 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_5
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(4294..5208)
-----------------
DNA (915bp)
protein (305aa)
Mg2 transporter protein CorA family protein; K03284 magnesium transporter Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Mg2 transporter protein CorA family protein; K03284 magnesium transporter id=5803505 bin=OD1_GWC2_34_28 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Mg2 transporter protein CorA family protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_6
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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5228..6481
-----------------
DNA (1254bp)
protein (418aa)
ctpA; carboxy-terminal-processing protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
ctpA; carboxy-terminal-processing protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] id=5803506 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ctpA; carboxy-terminal-processing protease (EC:3.4.21.102)
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_7
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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6497..6946
-----------------
DNA (450bp)
protein (150aa)
50S ribosomal protein L9 n=1 Tax=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) RepID=RL9_THELT
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
rplI; 50S ribosomal protein L9
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_8
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(6921..7205)
-----------------
DNA (285bp)
protein (95aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI00037C3976
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
rpmA; 50S ribosomal protein L27
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_9
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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7231..7572
-----------------
DNA (342bp)
protein (114aa)
transmembrane_regions Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
transmembrane_regions id=5803509 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_10
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(7642..7842)
-----------------
DNA (201bp)
protein (67aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_11
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(7839..8252)
-----------------
DNA (414bp)
protein (138aa)
transmembrane_regions Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
transmembrane_regions id=5226897 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_12
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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8368..8652
-----------------
DNA (285bp)
protein (95aa)
Transcriptional regulator, MerR family Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Transcriptional regulator, MerR family id=2130250 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_13
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(8667..9380)
-----------------
DNA (714bp)
protein (238aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein id=133589 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_14
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(9380..10420)
-----------------
DNA (1041bp)
protein (347aa)
peptidase M24; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
pepP; putative proline aminopeptidase (EC:3.4.11.9); K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] id=136429 bin=ACD8 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=ACD8 organism_group=OD1-i organism_desc=OD1-i
peptidase M24
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_15
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(10489..11169)
-----------------
DNA (681bp)
protein (227aa)
peptidase S51 dipeptidase E; K05995 dipeptidase E [EC:3.4.13.21] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A9U9_9BACT
peptidase S51 dipeptidase E
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_16
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(11160..12149)
-----------------
DNA (990bp)
protein (330aa)
protein-S-isoprenylcysteine methyltransferase Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Uncharacterized protein id=2437871 bin=GWA1_Kazan_50_15 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWA1_Kazan_50_15 organism_group=Kazan organism_desc=Probably Kazan: candidate for curation
protein-S-isoprenylcysteine methyltransferase
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_17
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(12184..12807)
-----------------
DNA (624bp)
protein (208aa)
parvulin-like peptidyl-prolyl isomerase Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein id=41745 bin=ACD37 species=ACD37 genus=ACD37 taxon_order=ACD37 taxon_class=ACD37 phylum=OP11 tax=ACD37 organism_group=OP11 (Microgenomates) organism_desc=OP11
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_18
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(12846..13793)
-----------------
DNA (948bp)
protein (316aa)
obgE; GTPase ObgE; K03979 GTP-binding protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
obgE; GTPase ObgE; K03979 GTP-binding protein id=14423789 bin=bin11_novelCP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin11_novelCP organism_group=Unknown_CP
obgE; GTPase ObgE
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_19
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(13890..15044)
-----------------
DNA (1155bp)
protein (385aa)
Phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Staphylococcus warneri L37603 RepID=C4W905_STAWA id=3258 bin=ACD11 species=Staphylococcus warneri genus=Staphylococcus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
Phosphoribosylformylglycinamidine cyclo-ligase Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_20
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(15080..16378)
-----------------
DNA (1299bp)
protein (433aa)
hypothetical protein ; K01587 phosphoribosylaminoimidazole carboxylase / phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:4.1.1.21 6.3.2.6] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_4
Hypothetical protein CBG03675; K01587 phosphoribosylaminoimidazole carboxylase / phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:4.1.1.21 6.3.2.6] id=3293 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_21
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(16472..17446)
-----------------
DNA (975bp)
protein (325aa)
hypothetical protein
id=1816710 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
id=1816710 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_22
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(17439..18710)
-----------------
DNA (1272bp)
protein (424aa)
Monoamine oxidase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I356_9BRAD
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_23
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(18886..20346)
-----------------
DNA (1461bp)
protein (487aa)
putative ABC transporter ATPase (EC:3.6.3.-); K06158 ATP-binding cassette, subfamily F, member 3 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Uncharacterized ABC transporter ATP-binding protein ybiT id=3012797 bin=GWC1_OD1_38_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_24
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(20407..21009)
-----------------
DNA (603bp)
protein (201aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_25
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(21049..21258)
-----------------
DNA (210bp)
protein (70aa)
Putative periplasmic or secreted lipoprotein n=1 Tax=Dactylococcopsis salina PCC 8305 RepID=K9YYQ8_DACSA
periplasmic or secreted lipoprotein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
periplasmic or secreted lipoprotein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_26
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(21239..21490)
-----------------
DNA (252bp)
protein (84aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030022A2
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_27
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(21548..21883)
-----------------
DNA (336bp)
protein (112aa)
Uncharacterized protein n=1 Tax=Lottia gigantea RepID=V4AEA7_LOTGI
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_28
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(21888..22628)
-----------------
DNA (741bp)
protein (247aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036E4BD1
3-oxoacyl-(acyl-carrier-protein) reductase Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
3-oxoacyl-(acyl-carrier-protein) reductase
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_29
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(22705..23160)
-----------------
DNA (456bp)
protein (152aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_30
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

23385..23852
-----------------
DNA (468bp)
protein (156aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Displaying items 1-30 of 45 in total

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