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RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_1
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(3..284)
-----------------
DNA (282bp)
protein (94aa)
transcriptional coactivator/pterin dehydratase; K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
putative pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
Threonine synthase id=3423618 bin=GWA1_ZB2_49_26 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_2
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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386..1447
-----------------
DNA (1062bp)
protein (354aa)
O-sialoglycoprotein endopeptidase (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp id=2824031 bin=GWC1_OD1_38_17 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_3
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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1469..3637
-----------------
DNA (2169bp)
protein (723aa)
valS; Valyl-tRNA ligase ValS (EC:6.1.1.9) Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein; K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=15190580 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
valS; Valyl-tRNA ligase ValS (EC:6.1.1.9)
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_4
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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3622..4371
-----------------
DNA (750bp)
protein (250aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein id=5803648 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_5
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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4368..4835
-----------------
DNA (468bp)
protein (156aa)
Small heat shock protein n=3 Tax=candidate division TM7 RepID=UPI00016B2686 id=129716 bin=ACD7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
heat shock protein Hsp20; K13993 HSP20 family protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
heat-shock protein Hsp20
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_6
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(4986..5348)
-----------------
DNA (363bp)
protein (121aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_7
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(5489..5740)
-----------------
DNA (252bp)
protein (84aa)
excinuclease ABC C subunit domain-containing protein; K07461 putative endonuclease Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
excinuclease ABC C subunit domain-containing protein; K07461 putative endonuclease id=15191385 bin=GWC1_OP11_49_16_COMPLETE species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
excinuclease ABC C subunit domain-containing protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_8
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(5958..6836)
-----------------
DNA (879bp)
protein (293aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_9
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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6879..8513
-----------------
DNA (1635bp)
protein (545aa)
recombinase Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Recombinase id=2720351 bin=GWA1_ZB2_49_26 species=Hippea maritima genus=Hippea taxon_order=Desulfurellales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
recombinase
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_10
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(8443..9540)
-----------------
DNA (1098bp)
protein (366aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CBV6_9PLAN
chromosome condensation regulator RCC1 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Kelch-type repeat-containing protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_11
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(9774..10946)
-----------------
DNA (1173bp)
protein (391aa)
Uncharacterized protein n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZWX7_DESOH
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_12
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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10980..11309
-----------------
DNA (330bp)
protein (110aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_13
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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11331..12647
-----------------
DNA (1317bp)
protein (439aa)
recombinase Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Recombinase id=2720351 bin=GWA1_ZB2_49_26 species=Hippea maritima genus=Hippea taxon_order=Desulfurellales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
recombinase
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_14
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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12663..12947
-----------------
DNA (285bp)
protein (95aa)
Recombinase Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Recombinase id=2720350 bin=GWA1_ZB2_49_26 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_15
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(12911..13222)
-----------------
DNA (312bp)
protein (104aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_16
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(13212..13733)
-----------------
DNA (522bp)
protein (174aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_17
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(13736..14275)
-----------------
DNA (540bp)
protein (180aa)
transmembrane_regions 25..47 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
transmembrane_regions 25..47 id=96539 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_18
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(14272..15363)
-----------------
DNA (1092bp)
protein (364aa)
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Type IV pilus assembly protein PilM id=5227483 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
type IV pilus assembly protein PilM
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_19
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(15390..16802)
-----------------
DNA (1413bp)
protein (471aa)
id=3486137 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
id=3486137 bin=GWA1_ZB2_49_26 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_20
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(16771..17274)
-----------------
DNA (504bp)
protein (168aa)
seg Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
seg id=5803120 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_21
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(17275..17814)
-----------------
DNA (540bp)
protein (180aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_22
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(17792..18238)
-----------------
DNA (447bp)
protein (149aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7Q148_9BACT
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_23
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(18241..19449)
-----------------
DNA (1209bp)
protein (403aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037114F0
type II secretion system protein; K02653 type IV pilus assembly protein PilC Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_24
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(19454..21217)
-----------------
DNA (1764bp)
protein (588aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035E2C1A
putative type II secretion system protein E Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
secretion system protein E
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_25
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(21226..21597)
-----------------
DNA (372bp)
protein (124aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035E4390
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_26
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(21609..22556)
-----------------
DNA (948bp)
protein (316aa)
signal transduction histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003804C61
two component sensor histidine kinase
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_27
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

22669..23859
-----------------
DNA (1191bp)
protein (397aa)
NusA antitermination factor; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
NusA antitermination factor id=3736477 bin=GWC2_OD1_43_27 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
NusA antitermination factor
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_7124_28
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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23852..24250
-----------------
DNA (399bp)
protein (133aa)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_cu
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] id=15189000 bin=GWE1_Berkelbacteria_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
Displaying 28 items

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