ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_1598_39

Organism: Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_01_FULL_43_100

near complete RP 37 / 55 BSCG 42 / 51 MC: 1 ASCG 8 / 38 MC: 1
Location: comp(32012..32611)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 199.0
  • Bit_score: 390
  • Evalue 1.20e-105
RNA polymerase, sigma-24 subunit, ECF subfamily protein id=3736405 bin=GWC2_OD1_43_27 species=Flavobacterium sp. CF136 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete) similarity UNIREF
DB: UNIREF100
  • Identity: 36.0
  • Coverage: 186.0
  • Bit_score: 127
  • Evalue 1.40e-26
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 35.6
  • Coverage: 180.0
  • Bit_score: 94
  • Evalue 4.70e-17

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_OD1_Giovannonibacteria_43_11c → Giovannonibacteria → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 600
ATGGCGAAGAAACGTTATAAAAGCCTTATGGATGAGAGACCAGAAGCTTTAAAGGAGACAAGTGATGAGGTATTGCTCGCAGCTTCTGTCGAGTACCCTGATCTTTTCGGAGTTTTGGTTGAGCGCTACCAGGCCGCTTTTCTACGCTTCGCCGGGAGAATATTGAATTCCAAAGAAGAAGCGGAAGATGTGGTCCAAGATGCTTTTTTGAAAATCTACCGGCATGCCGACCAACTCCAAGAGGGGCCGAATTCAAAATTCAAGAGCTGGGGGTATAAAATCGTCTTTAACACCGCGCTTACCAAATATCGGAGCCTGAAAAAGAGGATGGGGGAAATGACTTATCTCGATACGTTTTTATACGAGACCTTGGGCTCGAAAGAATTCGAGGAAAATTTGGAGGCGGAGATATTGGTTAAGGGAATTTTGGAGAAGATGCCGGATGATTTCAGGGAACTTCTCGAGATGCATTATTTAAAAGGGCTTTCATACGAAGAGATATCTAAACGCAAAGACATAACAATCCCCGCGCTCAAAATGAGATTATTCAGGGCTCGGGAAGTCTTCAGAAGCGTTTCCGGTGAGGCGACGCAAATATAA
PROTEIN sequence
Length: 200
MAKKRYKSLMDERPEALKETSDEVLLAASVEYPDLFGVLVERYQAAFLRFAGRILNSKEEAEDVVQDAFLKIYRHADQLQEGPNSKFKSWGYKIVFNTALTKYRSLKKRMGEMTYLDTFLYETLGSKEFEENLEAEILVKGILEKMPDDFRELLEMHYLKGLSYEEISKRKDITIPALKMRLFRAREVFRSVSGEATQI*