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RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_1
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2..127)
DNA (126bp) protein (42aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_2
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

221..1348
DNA (1128bp) protein (376aa)
Peptidase C60A/B, sortase domain Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Peptidase C60A/B, sortase domain id=5803392 bin=OD1_GWC2_34_28 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_3
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(1574..2599)
DNA (1026bp) protein (342aa)
DacC3; D-alanyl-D-alanine carboxypeptidase; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
D-alanyl-D-alanine carboxypeptidase family protein; K07262 D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] id=15190196 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
DacC3; D-alanyl-D-alanine carboxypeptidase
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_4
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2761..3519)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EZM2_9BACT
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_5
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3865..5136)
DNA (1272bp) protein (424aa)
seryl-tRNA synthetase (EC:6.1.1.11) Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Serine--tRNA ligase id=4968554 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_6
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5343..6212
DNA (870bp) protein (290aa)
DNA protecting protein DprA; K04096 DNA processing protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
DNA protecting protein DprA id=4968556 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_7
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

6368..6985
DNA (618bp) protein (206aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_8
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

7237..9438
DNA (2202bp) protein (734aa)
topA; DNA topoisomerase I; K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] id=5803426 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
topA; DNA topoisomerase I
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_9
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(9707..10708)
DNA (1002bp) protein (334aa)
parB; chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
id=5227213 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
stage 0 sporulation protein J
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_10
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

10933..11901
DNA (969bp) protein (323aa)
tRNA isopentenyltransferase MiaA; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] id=5803396 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
tRNA delta(2)-isopentenylpyrophosphate transferase
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_11
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


comp(12081..12239)
DNA (159bp) protein (53aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003662EDC
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
50S ribosomal protein L33
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_12
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

12424..13539
DNA (1116bp) protein (372aa)
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Alanine racemase id=1915988 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
alanine racemase
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_13
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(13911..16601)
DNA (2691bp) protein (897aa)
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB id=5803369 bin=OD1_GWC2_34_28 species=uncultured bacterium CSLC2 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ATP-dependent chaperone ClpB
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_14
unknown

Not on your lists

16887..17060
DNA (174bp) protein (58aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_15
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(17224..18414)
DNA (1191bp) protein (397aa)
cysteine desulfurase NifS; K04487 cysteine desulfurase [EC:2.8.1.7] id=5803479 bin=OD1_GWC2_34_28 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
cysteine desulfurase NifS Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
cysteine desulfurase NifS
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_16
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

18577..19050
DNA (474bp) protein (158aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
hypothetical protein id=5803476 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_17
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

19469..20992
DNA (1524bp) protein (508aa)
infB; translation initiation factor IF-2 Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2 id=5803475 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
infB; translation initiation factor IF-2
RIFCSPHIGHO2_01_FULL_OD1_43_120_rifcsphigho2_01_scaffold_5009_18
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

21380..21700
DNA (321bp) protein (107aa)
Ribosome-binding factor A Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Ribosome-binding factor A id=5803474 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Displaying 18 items

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