ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_1
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(3..194)
-----------------
DNA (192bp)
protein (64aa)
UvrABC system protein A n=1 Tax=Kingella kingae PYKK081 RepID=H8DZH5_9NEIS
UvrABC system protein A Tax=GWA1_OD1_43_15
uvrA; excinuclease ABC subunit A
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_2
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

251..1558
-----------------
DNA (1308bp)
protein (436aa)
Excinuclease ABC, C subunit domain protein Tax=GWA1_OD1_43_15
Excinuclease ABC subunit C id=1915927 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
excinuclease ABC subunit C
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_3
R_OD1_Giovannonibacteria_45_23, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

1802..2020
-----------------
DNA (219bp)
protein (73aa)
preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPHIGHO2_01_FULL_OD1_Giovannonibacteria_45_23_curated
seg 7..24 id=87431 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
secG; preprotein translocase, SecG subunit
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_4

Not on your lists

2030..3613
-----------------
DNA (1584bp)
protein (528aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63133.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
Extracellular solute-binding protein family 5 id=4965044 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
putative ABC transporter substrate binding protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_5
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

3617..4291
-----------------
DNA (675bp)
protein (225aa)
Thermophilic glucose-6-phosphate isomerase-like enzyme n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXP3_METHD
Glucose-6-phosphate isomerase {ECO:0000313|EMBL:KKT20981.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
Glucose-6-phosphate isomerase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_6
unknown

Not on your lists

4421..4540
-----------------
DNA (120bp)
protein (40aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_7

Not on your lists

4562..6382
-----------------
DNA (1821bp)
protein (607aa)
mta:Moth_1069 hypothetical protein; K12574 ribonuclease J [EC:3.1.-.-] id=133524 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Putative hydrolase of the metallo-beta-lactamase superfamily {ECO:0000313|EMBL:KKT63135.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW201
metallo-beta-lactamase superfamily hydrolase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_8

Not on your lists

comp(6441..6659)
-----------------
DNA (219bp)
protein (73aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63136.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_9
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

6833..7042
-----------------
DNA (210bp)
protein (70aa)
Tax=GWA1_OD1_43_15
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_10

Not on your lists

7043..7309
-----------------
DNA (267bp)
protein (89aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63138.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RelE-like id=5094085 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_11

Not on your lists

7408..7929
-----------------
DNA (522bp)
protein (174aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63139.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_12
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

8007..8999
-----------------
DNA (993bp)
protein (331aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035FD2BB
Tryptophan--tRNA ligase Tax=GWA1_OD1_43_15
tryptophanyl-tRNA synthetase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_13
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(8985..10193)
-----------------
DNA (1209bp)
protein (403aa)
phosphomannomutase (EC:5.4.2.8)
Strongly similar to phosphomannomutase Tax=GWA1_OD1_43_15
Phosphomannomutase/phosphoglucomutase id=4790117 bin=GWC2_OD1_43_27 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_14

Not on your lists

10345..10905
-----------------
DNA (561bp)
protein (187aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003615D0F
Transcriptional regulator, PaaX family {ECO:0000313|EMBL:KKS96395.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_15

Not on your lists

10968..11903
-----------------
DNA (936bp)
protein (312aa)
GTP-binding protein YchF {ECO:0000313|EMBL:KKT63143.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
sen:SACE_0960 ychF; GTP-dependent nucleic acid-binding protein EngD; K06942 id=8091 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
ychF; GTP-dependent nucleic acid-binding protein EngD
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_16
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

11963..12418
-----------------
DNA (456bp)
protein (152aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT21090.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_17

Not on your lists

12426..12869
-----------------
DNA (444bp)
protein (148aa)
Single-stranded DNA-binding protein {ECO:0000313|EMBL:KKT63145.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
single-strand binding protein; K03111 single-strand DNA-binding protein id=5803295 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
single-strand binding protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_18
R_OD1_Giovannonibacteria_44_11, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


12873..13088
-----------------
DNA (216bp)
protein (72aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003760B33
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 Tax=RIFCSPHIGHO2_02_FULL_OD1_Giovannonibacteria_44_11_curated
30S ribosomal protein S18
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_19
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


comp(13098..14114)
-----------------
DNA (1017bp)
protein (339aa)
recA protein Tax=GWA1_OD1_43_15
id=5227534 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
recombinase RecA
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_20
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(14122..14451)
-----------------
DNA (330bp)
protein (110aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT21087.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
XRE family transcriptional regulator id=41252 bin=ACD37 species=ACD37 genus=ACD37 taxon_order=ACD37 taxon_class=ACD37 phylum=OP11 tax=ACD37 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_21

Not on your lists

14549..14917
-----------------
DNA (369bp)
protein (123aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63148.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_22
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(14975..15178)
-----------------
DNA (204bp)
protein (68aa)
Tax=GWA1_OD1_43_15
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_23

Not on your lists

comp(15192..15446)
-----------------
DNA (255bp)
protein (85aa)
Putative uncharacterized protein n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YKT0_THEYD
Uncharacterized protein {ECO:0000313|EMBL:KKT63150.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_6988_24
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(15457..17583)
-----------------
DNA (2127bp)
protein (709aa)
Translocase FtsK protein {ECO:0000313|EMBL:KKT21083.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
Cell divisionFtsK/SpoIIIE id=4790083 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
ftsK; cell division protein ftsK
Displaying 24 items

View Taxonomy