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RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_1

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comp(173..1396)
DNA (1224bp) protein (408aa)
General secretion pathway protein F {ECO:0000313|EMBL:KKS95310.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
type IV pilin; K02653 type IV pilus assembly protein PilC id=5227297 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_2
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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comp(1396..2463)
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000373007F
Pilus retraction protein PilT Tax=GWA1_OD1_43_15
twitching motility protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_3

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comp(2472..2873)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037FEA68
Response regulator {ECO:0000313|EMBL:KKT62215.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
Two component transcriptional regulator, winged helix
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_4

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comp(2870..3355)
DNA (486bp) protein (162aa)
gspG; general secretion pathway protein G
General secretion pathway protein G {ECO:0000313|EMBL:KKT62216.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
Putative uncharacterized protein id=3977857 bin=GWA2_CPR4_42_17 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_5

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comp(3394..5106)
DNA (1713bp) protein (571aa)
Type IV pilus assembly protein PilB {ECO:0000313|EMBL:KKT62217.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
general secretion pathway protein E id=5803081 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type IV pilus assembly protein PilB
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_6

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comp(5135..5410)
DNA (276bp) protein (92aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT62218.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_7
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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comp(5407..5961)
DNA (555bp) protein (185aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT20257.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
transmembrane_regions id=5227302 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_8
GWA1_OD1_44_29, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(5958..6488)
DNA (531bp) protein (177aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT64141.1}; TaxID=1618646 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA1_44_29.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_9
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(6492..7610)
DNA (1119bp) protein (373aa)
Type IV pilus assembly protein PilM Tax=GWA1_OD1_43_15
Type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM id=5803086 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type IV pilus assembly protein PilM
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_10

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7648..8370
DNA (723bp) protein (241aa)
Phosphoribosyltransferase {ECO:0000313|EMBL:KKT62222.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
phosphoribosyltransferase id=6873 bin=ACD13 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11
phosphoribosyltransferase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_11
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

8430..10163
DNA (1734bp) protein (578aa)
Uncharacterized protein n=2 Tax=Geobacter metallireducens RepID=Q39ZJ2_GEOMG
Band 7 protein {ECO:0000313|EMBL:KKT20262.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_12

Not on your lists

comp(10570..10989)
DNA (420bp) protein (140aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT62224.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_13
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(11126..11380)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000365E383
Uncharacterized protein {ECO:0000313|EMBL:KKT20264.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_14

Not on your lists

comp(11431..12012)
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PJD2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KKT62226.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_15
GWA2_OD1_42_18, Parcubacteria, Bacteria

Not on your lists

comp(11982..12371)
DNA (390bp) protein (130aa)
Recombinase Tax=GWA2_OD1_42_18
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_16
GWA1_OD1_40_21, Parcubacteria, Bacteria

Not on your lists

12586..13062
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MPJ4_9FIRM
Putative prophage ps3 protein01-like protein {ECO:0000313|EMBL:KKR53626.1}; TaxID=1618784 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_40_21.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_17
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

13084..13482
DNA (399bp) protein (133aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_18
GWB1_OD1_44_7, Parcubacteria, Bacteria

Not on your lists

13878..14594
DNA (717bp) protein (239aa)
Putative lipoprotein Tax=GWB1_OD1_44_7
hypothetical protein id=5803095 bin=OD1_GWC2_34_28 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
lytic transglycosylase YomI
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_19
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

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comp(14698..15561)
DNA (864bp) protein (288aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_13027_20
unknown

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comp(15610..15873)
DNA (264bp) protein (88aa)

This feature has no annotations

Displaying 20 items

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