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RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_1
GWF2_OD1_41_8_partial, Jorgensenbacteria, Parcubacteria, Bacteria

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comp(161..646)
-----------------
DNA (486bp)
protein (162aa)
R3H domain protein {ECO:0000313|EMBL:KKS23915.1}; TaxID=1618667 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWF2_41_8.;"
R3H domain protein id=5227400 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_2

Not on your lists

comp(707..1450)
-----------------
DNA (744bp)
protein (248aa)
60 kDa inner membrane insertion protein {ECO:0000313|EMBL:KKT62972.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
60 kDa inner membrane insertion protein; K03217 preprotein translocase subunit YidC id=5803200 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
60 kDa inner membrane insertion protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_3
GWF2_OD1_41_8_partial, Jorgensenbacteria, Parcubacteria, Bacteria

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comp(1425..1784)
-----------------
DNA (360bp)
protein (120aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS23913.1}; TaxID=1618667 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWF2_41_8.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_4
CG_CPR10_01, CG_CPR10, Bacteria

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comp(1791..1925)
-----------------
DNA (135bp)
protein (45aa)
50S ribosomal protein L34 n=11 Tax=Clostridium perfringens RepID=RL34_CLOP1
rpmH; 50S ribosomal protein L34; K02914 large subunit ribosomal protein L34 Tax=CG_CPR10_01
rpmH; 50S ribosomal protein L34
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_5
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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2036..3385
-----------------
DNA (1350bp)
protein (450aa)
Chromosomal replication initiator protein DnaA {ECO:0000313|EMBL:KKT21132.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
Chromosomal replication initiator protein DnaA id=4731911 bin=GWC2_OD1_43_27 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
chromosomal replication initiator protein DnaA
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_6
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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3537..4640
-----------------
DNA (1104bp)
protein (368aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWX1_9BACT
Polymerase III subunit beta protein {ECO:0000313|EMBL:KKT21133.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_7

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comp(4610..7066)
-----------------
DNA (2457bp)
protein (819aa)
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:KKT62976.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
putative penicillin-binding protein id=5803206 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
1A family penicillin-binding protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_8

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7119..8291
-----------------
DNA (1173bp)
protein (391aa)
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine-tRNA ligase {ECO:0000313|EMBL:KKS96495.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
Tyrosine--tRNA ligase id=3013089 bin=GWC1_OD1_38_17 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_9

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comp(8295..8447)
-----------------
DNA (153bp)
protein (51aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT62978.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_10
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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comp(8536..9012)
-----------------
DNA (477bp)
protein (159aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000313|EMBL:KKT21137.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
Crossover junction endodeoxyribonuclease RuvC id=2563244 bin=GWF1_Spirochaetes_51_8 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
crossover junction endodeoxyribonuclease RuvC
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_11

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comp(9009..9560)
-----------------
DNA (552bp)
protein (184aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT62980.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
YebC/PmpR family DNA-binding regulatory protein id=5803211 bin=OD1_GWC2_34_28 species=unknown genus=Fervidobacterium taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_12
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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comp(9544..10050)
-----------------
DNA (507bp)
protein (169aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EN28_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKT21283.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_13
R_OD1_Giovannonibacteria_45_23, Giovannonibacteria, Parcubacteria, Bacteria

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comp(10047..10244)
-----------------
DNA (198bp)
protein (66aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Giovannonibacteria_45_23_curated
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_14
unknown

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comp(10229..10495)
-----------------
DNA (267bp)
protein (89aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_15

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comp(10886..11149)
-----------------
DNA (264bp)
protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT62983.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
id=3423635 bin=GWA1_ZB2_49_26 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_16
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(11106..11360)
-----------------
DNA (255bp)
protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT21286.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
id=3423636 bin=GWA1_ZB2_49_26 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_17
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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comp(11406..12440)
-----------------
DNA (1035bp)
protein (345aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PY80_9BACT
Holliday junction ATP-dependent DNA helicase RuvB Tax=GWA1_OD1_43_15
Holliday junction DNA helicase RuvB
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_18
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(12657..14312)
-----------------
DNA (1656bp)
protein (552aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT21288.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
pilB1; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB id=5803215 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_19

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comp(14331..15383)
-----------------
DNA (1053bp)
protein (351aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT62987.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_20

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15528..16274
-----------------
DNA (747bp)
protein (249aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT62988.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_21

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16324..16776
-----------------
DNA (453bp)
protein (151aa)
ATP/GTP hydrolase {ECO:0000313|EMBL:KKT62989.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
Putative uncharacterized protein id=4731870 bin=GWC2_OD1_43_27 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
ATP/GTP hydrolase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_22

Not on your lists

16821..17252
-----------------
DNA (432bp)
protein (144aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BZR6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKT62990.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_23
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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17520..20018
-----------------
DNA (2499bp)
protein (833aa)
polA; DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] id=5803218 bin=OD1_GWC2_34_28 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
polA; DNA polymerase I (EC:2.7.7.7)
Polymerase protein {ECO:0000313|EMBL:KKT21293.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_24

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20021..20656
-----------------
DNA (636bp)
protein (212aa)
Two-component sensor kinase n=1 Tax=Arcobacter sp. L RepID=G2HT91_9PROT
Two-component sensor kinase {ECO:0000313|EMBL:KKT62992.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
two-component sensor kinase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_25

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20674..21279
-----------------
DNA (606bp)
protein (202aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT62993.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_26

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21287..22297
-----------------
DNA (1011bp)
protein (337aa)
ABC-type uncharacterized transport system, periplasmic component n=1 Tax=Thermoanaerobacterium thermosaccharolyticum M0795 RepID=L0INI3_THETR
ABC transporter substrate binding protein {ECO:0000313|EMBL:KKT62994.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
ABC-type uncharacterized transport system, periplasmic component
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_27
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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22302..23336
-----------------
DNA (1035bp)
protein (345aa)
ABC-type uncharacterized transport system, periplasmic component n=1 Tax=Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) RepID=I4AEG1_DESDJ
ABC-type uncharacterized transport system, periplasmic component Tax=GWA1_OD1_43_15
ABC transporter substrate-binding protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_28

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23376..24407
-----------------
DNA (1032bp)
protein (344aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS96514.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
hypothetical protein
Putative uncharacterized protein id=1956523 bin=GWD2_Deltaproteobacteria_55_8 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_29
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

24447..25469
-----------------
DNA (1023bp)
protein (341aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT21212.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
hypothetical protein; K01989 putative ABC transport system substrate-binding protein id=14625434 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
lipoprotein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_4166_30
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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25476..27560
-----------------
DNA (2085bp)
protein (695aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI0003751E19
Multi-sensor signal transduction histidine kinase Tax=GWA1_OD1_43_15
multi-sensor signal transduction histidine kinase
Displaying items 1-30 of 45 in total

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