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RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379

Search features with annotation key words

Displaying items 1-30 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_1

Not on your lists

comp(3..644)
DNA (642bp) protein (214aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63637.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_2
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(768..1574)
DNA (807bp) protein (269aa)
Tax=GWA1_OD1_43_15
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_3

Not on your lists

1798..2679
DNA (882bp) protein (294aa)
Cold-shock DNA-binding domain protein n=1 Tax=Sebaldella termitidis (strain ATCC 33386 / NCTC 11300) RepID=D1ANQ1_SEBTE
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:KKT63635.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
cold-shock protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_4

Not on your lists

2848..3186
DNA (339bp) protein (113aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63634.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_5

Not on your lists

comp(3270..3512)
DNA (243bp) protein (81aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63633.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_6

Not on your lists

3608..4489
DNA (882bp) protein (294aa)
Protecting protein DprA protein {ECO:0000313|EMBL:KKT63632.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
UPI0001E2C255 related cluster id=5227209 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
DNA protecting protein DprA
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_7
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

4490..6697
DNA (2208bp) protein (736aa)
DNA topoisomerase 1 n=1 Tax=uncultured bacterium RepID=K1ZHR3_9BACT
Topoisomerase protein {ECO:0000313|EMBL:KKT21010.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
topA; DNA topoisomerase I
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_8

Not on your lists

6678..8408
DNA (1731bp) protein (577aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5)
GTP pyrophosphokinase {ECO:0000313|EMBL:KKT63630.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
(P)ppGpp synthetase I, SpoT/RelA id=2824562 bin=GWC1_OD1_38_17 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_9
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(8416..9273)
DNA (858bp) protein (286aa)
ParB-like protein partition protein {ECO:0000313|EMBL:KKT21012.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
parB; chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family id=5803595 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
chromosome segregation DNA-binding protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_10
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(9545..10018)
DNA (474bp) protein (158aa)
bcrC; undecaprenyl-diphosphatase BcrC (EC:3.6.1.27)
Bacitracin transport permease protein BcrC id=4530142 bin=GWF2_Firmicute_51_9 species=Brevibacillus laterosporus genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
Bacitracin transport permease protein BcrC Tax=GWA1_OD1_43_15
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_11

Not on your lists

comp(10028..10882)
DNA (855bp) protein (285aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD {ECO:0000313|EMBL:KKT63627.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
Bifunctional protein FolD id=4530143 bin=GWF2_Firmicute_51_9 species=Thiovulum sp. ES genus=Thiovulum taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWF2_Firmicute_51_9 organism_group=Firmicute
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_12
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(10879..11760)
DNA (882bp) protein (294aa)
RNA-directed DNA polymerase id=4530225 bin=GWF2_Firmicute_51_9 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWF2_Firmicute_51_9 organism_group=Firmicute
RNA-directed DNA polymerase Tax=GWA1_OD1_43_15
RNA-directed DNA polymerase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_13
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

11886..12248
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B51DE8
Uncharacterized protein {ECO:0000313|EMBL:KKT21519.1}; Flags: Fragment;; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_14

Not on your lists

comp(12333..12545)
DNA (213bp) protein (71aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63625.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_15

Not on your lists

comp(12628..13176)
DNA (549bp) protein (183aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63624.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
hypothetical protein id=9063 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_16
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

13362..13757
DNA (396bp) protein (132aa)
Transposase n=5 Tax=unclassified Rhodobacterales RepID=A3JQH3_9RHOB id=9296 bin=ACD15 species=unknown genus=unknown taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
Transposase for IS3514b Tax=GWA1_OD1_43_15
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_17
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(14323..15501)
DNA (1179bp) protein (393aa)
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000313|EMBL:KKT21524.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
id=5227252 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_18
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


comp(15498..17858)
DNA (2361bp) protein (787aa)
leuS; leucyl-tRNA ligase LeuS (EC:6.1.1.4)
Leucyl-tRNA ligase LeuS {ECO:0000313|EMBL:KKT21525.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
Leucine--tRNA ligase id=4783216 bin=GWC2_OD1_43_27 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_19

Not on your lists

comp(17944..18321)
DNA (378bp) protein (126aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63619.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_20

Not on your lists

comp(18368..19150)
DNA (783bp) protein (261aa)
yabD; TatD-related deoxyribonuclease YabD; K03424 TatD DNase family protein [EC:3.1.21.-] id=15189985 bin=GWB1_SUB10_ACD81 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
Hydrolase, TatD family {ECO:0000313|EMBL:KKT63618.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
hydrolase, TatD family
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_21

Not on your lists


comp(19150..20736)
DNA (1587bp) protein (529aa)
Methionine-tRNA ligase {ECO:0000313|EMBL:KKT63617.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
Methionine--tRNA ligase id=2185712 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
methionyl-tRNA synthetase
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_22
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(20749..21018)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A588_9BACT
Plasmid stabilization system {ECO:0000313|EMBL:KKT21529.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_23
R_OD1_Giovannonibacteria_45_23, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(21015..21221)
DNA (207bp) protein (69aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Giovannonibacteria_45_23_curated
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_24
R_OD1_48_18, Parcubacteria, Bacteria

Not on your lists

21444..21668
DNA (225bp) protein (75aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_48_18_curated
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_25

Not on your lists

comp(21719..22759)
DNA (1041bp) protein (347aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63615.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
hypothetical protein id=5803290 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_26
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(22762..24033)
DNA (1272bp) protein (424aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037E82AE
Peptidase M16 domain protein Tax=GWA1_OD1_43_15
peptidase M16 domain-containing protein
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_27
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(24055..25803)
DNA (1749bp) protein (583aa)
ABC-type multidrug transport system, ATPase and permease component Tax=GWA1_OD1_43_15
msv:Mesil_1001 ABC transporter related protein; K06147 ATP-binding cassette, subfamily B, bacterial id=129997 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
multidrug ABC transporter ATPase/permease
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_28

Not on your lists

comp(25871..26062)
DNA (192bp) protein (64aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63612.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_29

Not on your lists


comp(26087..27316)
DNA (1230bp) protein (410aa)
glycyl-tRNA synthetase (EC:6.1.1.14)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXQ6_9BACT
Glycyl-tRNA synthetase {ECO:0000313|EMBL:KKT63611.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPHIGHO2_01_FULL_OD1_43_140_rifcsphigho2_01_scaffold_379_30

Not on your lists

comp(27325..29199)
DNA (1875bp) protein (625aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63610.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
id=2824162 bin=GWC1_OD1_38_17 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Displaying items 1-30 of 106 in total

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