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RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_1
R_OD1_Giovannonibacteria_44_11, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(1..1692)
DNA (1692bp) protein (564aa)
Uncharacterized protein n=1 Tax=Gaeumannomyces graminis var. tritici (strain R3-111a-1) RepID=J3PJD7_GAGT3
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Giovannonibacteria_44_11_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_2
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(2600..3520)
DNA (921bp) protein (307aa)
htpX; putative protease HtpX (EC:3.4.24.-); K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
heat shock protein HtpX (EC:3.4.24.-)
hypothetical protein, partial n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003724FFE
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_3
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

3731..4639
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00035C9FA7
Mg2+/Co2+ transporter Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Mg2+ and Co2+ transporter
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_4
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

4650..6065
DNA (1416bp) protein (472aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SEV4_9BACT
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_5
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

6169..7533
DNA (1365bp) protein (455aa)
DnaB; replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
DNA helicase n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000374E9DF
DnaB; replicative DNA helicase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_6
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

7542..8171
DNA (630bp) protein (210aa)
recR; Recombination protein recR Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Recombination protein RecR id=4948075 bin=GWC2_OD1_43_27 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
recR; recombination protein RecR
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_7
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists


comp(8198..8515)
DNA (318bp) protein (106aa)
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
50S ribosomal protein L21 id=2823878 bin=GWC1_OD1_38_17 species=Peptoniphilus sp. oral taxon 386 genus=Peptoniphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
50S ribosomal protein L21
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_8
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(8581..9339)
DNA (759bp) protein (253aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_9
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(9405..10496)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EMP3_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_10
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

10829..11167
DNA (339bp) protein (113aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_11
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(11186..12361)
DNA (1176bp) protein (392aa)
glmM; phosphomannomutase; K01840 phosphomannomutase [EC:5.4.2.8] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Phosphomannomutase id=1250126 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
glmM; phosphomannomutase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_12
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

12632..13801
DNA (1170bp) protein (390aa)
GTP-binding protein YchF; K06942 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
translation-associated GTPase id=3013268 bin=GWC1_OD1_38_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
GTP-binding protein YchF
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_13
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(13867..14391)
DNA (525bp) protein (175aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_14
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists


14490..14927
DNA (438bp) protein (146aa)
30S ribosomal protein S6 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
30S ribosomal protein S6 id=4790087 bin=GWC2_OD1_43_27 species=Helicobacter bizzozeronii genus=Helicobacter taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_15
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

15050..15505
DNA (456bp) protein (152aa)
ssb; single-strand binding protein family; K03111 single-strand DNA-binding protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Single-stranded DNA-binding protein id=3013257 bin=GWC1_OD1_38_17 species=Eikenella corrodens genus=Eikenella taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
ssb; single-strand binding protein family
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_16
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists


15527..15739
DNA (213bp) protein (71aa)
30S ribosomal protein S18 n=1 Tax=uncultured bacterium RepID=K1XET2_9BACT
30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
30S ribosomal protein S18
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_17
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists


comp(16186..17196)
DNA (1011bp) protein (337aa)
RecA protein; K03553 recombination protein RecA Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Protein RecA id=1915910 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
recA protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_18
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(17221..17883)
DNA (663bp) protein (221aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_19
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(17893..20085)
DNA (2193bp) protein (731aa)
cell division protein FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Cell divisionFtsK/SpoIIIE id=4790083 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
cell division protein FtsK
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_20
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(20179..23823)
DNA (3645bp) protein (1215aa)
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037A4755
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_21
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(23834..27067)
DNA (3234bp) protein (1078aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037C611A
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_22
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

27353..27688
DNA (336bp) protein (112aa)
hypothetical protein; K08972 putative membrane protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
transmembrane_regions 86..108 id=9190 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_23
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

27748..27966
DNA (219bp) protein (73aa)
preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
transmembrane_regions 50..71 id=14230 bin=ACD18 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=ACD18 organism_group=OD1 (Parcubacteria) organism_desc= OD1
secG; preprotein translocase subunit SecG
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_24
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

28021..29769
DNA (1749bp) protein (583aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00036210FC
putative ABC transporter substrate binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
putative ABC transporter substrate binding protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_25
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

29957..31717
DNA (1761bp) protein (587aa)
RNA-metabolising metallo-beta-lactamase; K12574 ribonuclease J [EC:3.1.-.-] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RNA-metabolising metallo-beta-lactamase id=3013277 bin=GWC1_OD1_38_17 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RNA-metabolising metallo-beta-lactamase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_26
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

31714..32715
DNA (1002bp) protein (334aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
tryptophanyl-tRNA synthetase n=1 Tax=Paenibacillus sp. JC66 RepID=UPI000289A0DE
tryptophanyl-tRNA synthetase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_27
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(32897..33139)
DNA (243bp) protein (81aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4512_28
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(33232..34065)
DNA (834bp) protein (278aa)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=uncultured bacterium RepID=K1Z2W2_9BACT
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
Displaying 28 items

View Taxonomy