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RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_1
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(1..417)
DNA (417bp) protein (139aa)
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Alkyl hydroperoxide reductase, F subunit id=4800149 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
thioredoxin reductase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_2
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(456..692)
DNA (237bp) protein (79aa)
YruB family glutaredoxin-like protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Putative glutaredoxin id=3423427 bin=GWA1_ZB2_49_26 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
glutaredoxin
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_3
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(707..1438)
DNA (732bp) protein (244aa)
DSBA oxidoreductase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
DSBA-like thioredoxin domain-containing protein id=5799791 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DSBA oxidoreductase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_4
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(1466..2707)
DNA (1242bp) protein (414aa)
NAD(P)H-nitrite reductase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q3L3_9FIRM
FAD-dependent pyridine nucleotide-disulfide oxidoreductase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_5
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(3282..3602)
DNA (321bp) protein (107aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_6
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(3610..4092)
DNA (483bp) protein (161aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein
hypothetical protein id=5241303 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_7
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(4141..5211)
DNA (1071bp) protein (357aa)
membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000364C39C
peptidase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_8
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(5215..5940)
DNA (726bp) protein (242aa)
hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Hemolysin A n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YHY6_THEYD
hemolysin A
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_9
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(6050..6718)
DNA (669bp) protein (223aa)
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
tRNA pseudouridine synthase B n=1 Tax=uncultured bacterium RepID=K2DD07_9BACT
tRNA pseudouridine synthase B
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_10
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(6715..7263)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI0003747375
ribosome recycling factor; K02838 ribosome recycling factor Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
ribosome recycling factor
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_11
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(7269..8462)
DNA (1194bp) protein (398aa)
BNR/Asp-box repeat-containing protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein id=96625 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
BNR/Asp-box repeat-containing protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_12
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(8491..9441)
DNA (951bp) protein (317aa)
DNA polymerase III subunit delta' (EC:2.7.7.7); K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
DNA polymerase III subunit delta' (EC:2.7.7.7)
DNA polymerase III, delta prime subunit n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J0K7_DESRM
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_13
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(9572..10582)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YTD6_9BACT
mreB; rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
mreB; rod shape-determining protein MreB
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_14
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(10610..11914)
DNA (1305bp) protein (435aa)
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7); K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
fri:FraEuI1c_1045 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7); K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] id=133408 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_15
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

12020..13108
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003798341
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_16
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(13127..13864)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI0003699944
family 2 glycosyl transferase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
family 2 glycosyl transferase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_17
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

13953..14051
DNA (99bp) protein (33aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_18765_18
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

14062..15045
DNA (984bp) protein (328aa)
ABC transporter ATP-binding protein; K06147 ATP-binding cassette, subfamily B, bacterial Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein id=5801897 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
hypothetical protein
Displaying 18 items

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