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RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_1
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(2..568)
DNA (567bp) protein (189aa)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25
UDP-N-acetylmuramyl-tripeptide synthetase id=2934166 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
UDP-N-acetylmuramyl-tripeptide synthetase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_2
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(609..1193)
DNA (585bp) protein (195aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_3
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(1198..1773)
DNA (576bp) protein (192aa)
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Holliday junction ATP-dependent DNA helicase RuvA id=4731865 bin=GWC2_OD1_43_27 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Holliday junction DNA helicase RuvA
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_4
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(1833..2339)
DNA (507bp) protein (169aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_5
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

2375..4342
DNA (1968bp) protein (656aa)
UvrABC system protein B; K03702 excinuclease ABC subunit B Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
UvrABC system protein B id=2934178 bin=GWC1_OD1_38_17 species=unknown genus=unknown taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
UvrABC system protein B
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_6
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists


4528..4797
DNA (270bp) protein (90aa)
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
30S ribosomal protein S20 id=1947773 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
rpsT; 30S ribosomal protein S20
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_7
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(4813..5712)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00038015F3
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_8
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(5800..6066)
DNA (267bp) protein (89aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_9
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(6254..8854)
DNA (2601bp) protein (867aa)
polA; DNA polymerase I (EC:2.7.7.7) Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
polA; DNA polymerase I (EC:2.7.7.7)
DNA polymerase id=2934196 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_10
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(8942..9394)
DNA (453bp) protein (151aa)
ATP/GTP hydrolase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein; K06925 id=133989 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
ATP/GTP hydrolase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_11
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

9547..9735
DNA (189bp) protein (63aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_12
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(9729..10556)
DNA (828bp) protein (276aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_13
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

10880..11989
DNA (1110bp) protein (370aa)
MgpA protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
MgpA protein id=1816992 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_14
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

12056..13723
DNA (1668bp) protein (556aa)
pilB2; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
pilB1; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB id=5803215 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
pilB2; type IV-A pilus assembly ATPase PilB
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_15
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

14004..15023
DNA (1020bp) protein (340aa)
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
tjr:TherJR_1182 Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB id=3134 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
Holliday junction DNA helicase RuvB
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_16
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

15028..15240
DNA (213bp) protein (71aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_17
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

15242..15787
DNA (546bp) protein (182aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Uncharacterized protein id=5801490 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_18
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

15793..16536
DNA (744bp) protein (248aa)
Probable transcriptional regulatory protein Theam_1111 n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T2I2_THEA1
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_19
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

16533..17027
DNA (495bp) protein (165aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC id=3257118 bin=GWC2_Chloroflexi_73_18 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_20
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

17082..17201
DNA (120bp) protein (40aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_21
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(17264..18463)
DNA (1200bp) protein (400aa)
tyrosyl-tRNA synthetase; K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B06 RepID=UPI000360969B
tyrosyl-tRNA synthetase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_22
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

18580..21120
DNA (2541bp) protein (847aa)
1A family penicillin-binding protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Penicillin-binding protein, 1A family id=4731909 bin=GWC2_OD1_43_27 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_23
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(21143..22243)
DNA (1101bp) protein (367aa)
DNA polymerase III subunit beta (EC:2.7.7.7) Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta id=2934338 bin=GWC1_OD1_38_17 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_24
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(22398..23777)
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037E6C2A
chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
chromosomal replication initiator protein DnaA
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_25
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

24096..24422
DNA (327bp) protein (109aa)
rnpA; ribonuclease P; K03536 ribonuclease P protein component [EC:3.1.26.5] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
rnpA; ribonuclease P (EC:3.1.26.5)
Ribonuclease P protein component n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LCY2_ACEWD
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_26
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

24397..24675
DNA (279bp) protein (93aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2E848_9FIRM
hypothetical protein; K08998 hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_27
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

24682..25440
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036FDF62
60 kDa inner membrane insertion protein; K03217 preprotein translocase subunit YidC Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
oxaA; inner membrane protein OxaA
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_28
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

25463..25873
DNA (411bp) protein (137aa)
Protein jag n=2 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L2M4_9BACT id=130617 bin=ACD7 species=Anaerobaculum hydrogeniformans genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
single-stranded nucleic acid binding R3H; K06346 spoIIIJ-associated protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
single-stranded nucleic acid binding R3H
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_29
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(25923..27140)
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=candidate division OD1 bacterium SCGC AAA011-G05 RepID=UPI00036A1116
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4098_30
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(27146..27628)
DNA (483bp) protein (161aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Displaying items 1-30 of 44 in total

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