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RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_1
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(62..652)
DNA (591bp) protein (197aa)
cheA; chemotaxis protein CheA; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FFJ9_9BACT
CheA signal transduction histidine kinase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_2
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

714..2309
DNA (1596bp) protein (532aa)
phosphoglyceromutase (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
phosphoglyceromutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase id=3736606 bin=GWC2_OD1_43_27 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_3
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

2622..4151
DNA (1530bp) protein (510aa)
HDIG/KH domain-containing protein; K06950 uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Ribonuclease Y id=3506547 bin=GWC1_OD1_38_17 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
HDIG/KH domain-containing protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_4
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

4191..4703
DNA (513bp) protein (171aa)
Adenylyl cyclase CyaB n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1K2H8_DESFR
Adenylyl cyclase CyaB Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_5
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

4901..5380
DNA (480bp) protein (160aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein id=120641 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_6
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

5383..5868
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZCL0_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_7
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(6163..6285)
DNA (123bp) protein (41aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_8
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

6388..6570
DNA (183bp) protein (61aa)
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
transmembrane_regions 51..73 id=96179 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
preprotein translocase subunit SecE
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_9
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

6577..7122
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00036AC61A
nusG; transcription antitermination factor Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
nusG; transcription antitermination factor
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_10
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists


7138..7560
DNA (423bp) protein (141aa)
50S ribosomal protein L11 n=2 Tax=Dictyoglomus RepID=RL11_DICT6
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
rplK; 50S ribosomal protein L11
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_11
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

7615..7857
DNA (243bp) protein (81aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_12
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(7896..8453)
DNA (558bp) protein (186aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
MG07298.4; hypothetical protein id=5241316 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
dephospho-CoA kinase, CoaE
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_13
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

8533..9639
DNA (1107bp) protein (369aa)
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine deaminase n=1 Tax=uncultured bacterium RepID=K1XFQ0_9BACT
2'-deoxycytidine 5'-triphosphate deaminase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_14
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

9833..10378
DNA (546bp) protein (182aa)
deoxycytidine triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Deoxycytidine triphosphate deaminase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8P230_GRAMM
deoxycytidine triphosphate deaminase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_15
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

10473..11159
DNA (687bp) protein (229aa)
tmk; thymidylate kinase Tmk (EC:2.7.4.9)
tmk; thymidylate kinase Tmk Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Thymidylate kinase id=1987545 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_16
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

11214..12938
DNA (1725bp) protein (575aa)
thymidylate synthase complementing protein ThyX Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
chl:Chy400_0381 thymidylate synthase complementing protein ThyX id=85827 bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
thymidylate synthase complementing protein ThyX
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_17
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

13009..14442
DNA (1434bp) protein (478aa)
putative hydrolase; K06885 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Deoxyguanosinetriphosphate triphosphohydrolase id=2009070 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
putative hydrolase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_18
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(14444..15121)
DNA (678bp) protein (226aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_27227_19
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(15195..15794)
DNA (600bp) protein (200aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NNT5_ROSCS
Displaying 19 items

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