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RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_1
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(15..872)
-----------------
DNA (858bp)
protein (286aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60) Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
2-hydroxy-3-oxopropionate reductase id=4354983 bin=GWC2_OP3-like_45_7 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_2
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(882..1121)
-----------------
DNA (240bp)
protein (80aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_3
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(1153..1434)
-----------------
DNA (282bp)
protein (94aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_4
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(1434..1940)
-----------------
DNA (507bp)
protein (169aa)
chemotaxis protein CheY n=1 Tax=Halomonas zhanjiangensis RepID=UPI00036FAE89
phoB; phosphate regulon transcriptional regulator PhoB; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
two component transcriptional regulator PhoB, winged helix family
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_5
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(2286..2807)
-----------------
DNA (522bp)
protein (174aa)
tRNA/rRNA methyltransferase (EC:2.1.1.-) Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
tRNA/rRNA methyltransferase (EC:2.1.1.-)
tRNA/rRNA methyltransferase (SpoU) id=4308549 bin=GWA2_OP3_53_43 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_6
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(2800..3594)
-----------------
DNA (795bp)
protein (265aa)
Putative membrane protein n=1 Tax=Rhodopirellula europaea 6C RepID=M2A9A7_9PLAN
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_7
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(3591..4082)
-----------------
DNA (492bp)
protein (164aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_8
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(4191..4856)
-----------------
DNA (666bp)
protein (222aa)
CmpX protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
Putative uncharacterized protein id=3695291 bin=GWF2_Planctomycete_41_51 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
CmpX protein
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_9
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

comp(5163..5507)
-----------------
DNA (345bp)
protein (115aa)
Tax=GWA2_WOR_2_47_8_curated
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_10
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(5507..6247)
-----------------
DNA (741bp)
protein (247aa)
hypothetical protein; K02067 putative ABC transport system substrate-binding protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
Mammalian cell entry related domain protein id=2527144 bin=GWC2_OP3-like_45_7 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_11
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(6356..7129)
-----------------
DNA (774bp)
protein (258aa)
ABC transporter-like protein; K02065 putative ABC transport system ATP-binding protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
ABC transporter related id=2527148 bin=GWC2_OP3-like_45_7 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
ABC transporter-like protein
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_12
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(7194..7994)
-----------------
DNA (801bp)
protein (267aa)
hypothetical protein; K02066 putative ABC transport system permease protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
ABC-type transport system id=2527151 bin=GWC2_OP3-like_45_7 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_13
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(8002..8388)
-----------------
DNA (387bp)
protein (129aa)
winged helix family two component transcriptional regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_
Two-component response regulator id=4230690 bin=GWF2_OP3_38_59 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
winged helix family two component transcriptional regulator
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_14
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(8453..9226)
-----------------
DNA (774bp)
protein (258aa)
ABC-type multidrug transport system permease component n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YVP8_LISDA
putative ABC transporter permease protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
putative ABC transporter permease protein
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_15
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(9223..10128)
-----------------
DNA (906bp)
protein (302aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Grimontia sp. AK16 RepID=R1IIF3_9GAMM
putative ATP-binding component of ABC transporter; K09687 antibiotic transport system ATP-binding protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
yadG; ABC transporter ATP-binding protein
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_16
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(10136..10552)
-----------------
DNA (417bp)
protein (139aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_17
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(10561..12825)
-----------------
DNA (2265bp)
protein (755aa)
Spermine synthase n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GGH3_9BACT
spermine synthase Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
spermine synthase
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_18
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(12934..13680)
-----------------
DNA (747bp)
protein (249aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_19
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(13701..14207)
-----------------
DNA (507bp)
protein (169aa)
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen id=4518756 bin=GWC2_OP3-like_45_7 species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
alkyl hydroperoxide reductase
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_20
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(14204..14875)
-----------------
DNA (672bp)
protein (224aa)
thiol:disulfide interchange protein; K04084 thiol:disulfide interchange protein DsbD [EC:1.8.1.8] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
Protein-disulfide reductase id=4518755 bin=GWC2_OP3-like_45_7 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
thiol:disulfide interchange protein
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_21
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15003..18584
-----------------
DNA (3582bp)
protein (1194aa)
Methionine synthase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EBG1_9SPHI
Methionine synthase {ECO:0000313|EMBL:EDM37060.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.
hypothetical protein
RIFCSPHIGHO2_01_FULL_OP3_48_9_rifcsphigho2_01_scaffold_8193_22
RLO_WOR_2_51_8, WOR-2, Bacteria

Not on your lists

18772..19416
-----------------
DNA (645bp)
protein (215aa)
Putative membrane protein id=4545000 bin=GWF2_OP3_38_59 species=GWF2_TM6_27_16 genus=GWF2_TM6_27_16 taxon_order=GWF2_TM6_27_16 taxon_class=GWF2_TM6_27_16 phylum=TM6 tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
Tax=RIFCSPLOWO2_12_FULL_WOR_2_51_8_curated
Displaying 22 items

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