ggKbase home page

RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_423

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_423_1
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(808..1242)
-----------------
DNA (435bp)
protein (145aa)
Nucleotidyltransferase n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YC16_DICT6
nucleotidyltransferase Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
nucleotidyltransferase
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_423_2
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

1837..3636
-----------------
DNA (1800bp)
protein (600aa)
threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
threonyl-tRNA synthetase n=1 Tax=Meiothermus timidus RepID=UPI0003788B47
threonyl-tRNA synthetase
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_423_3
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(4083..5186)
-----------------
DNA (1104bp)
protein (368aa)
seg Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
seg id=5801309 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_423_4
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(5359..7338)
-----------------
DNA (1980bp)
protein (660aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B id=3736858 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_423_5
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(7383..8651)
-----------------
DNA (1269bp)
protein (423aa)
phenylalanyl-tRNA synthetase, beta subunit Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Phenylalanine--tRNA ligase beta subunit id=3012613 bin=GWC1_OD1_38_17 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
phenylalanyl-tRNA synthetase, beta subunit
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_423_6
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists


comp(8654..9433)
-----------------
DNA (780bp)
protein (260aa)
ASCG--Phenylalanyl-tRNA--synthetase--alpha--subunit
BSCG--tRNA--synthetase--Phenylalanyl--alpha
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Phenylalanine--tRNA ligase alpha subunit id=3012602 bin=GWC1_OD1_38_17 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_423_7
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(9555..9845)
-----------------
DNA (291bp)
protein (97aa)
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_423_8
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(10066..11274)
-----------------
DNA (1209bp)
protein (403aa)
cell division protein FtsA; K03590 cell division protein FtsA Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
cell division protein FtsA; K03590 cell division protein FtsA id=5803489 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
cell division protein FtsA
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_423_9
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(11439..11828)
-----------------
DNA (390bp)
protein (130aa)
DNA mismatch endonuclease Vsr; K07458 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
DNA mismatch endonuclease Vsr; K07458 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] id=130638 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
DNA mismatch endonuclease Vsr
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_423_10
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(11832..12596)
-----------------
DNA (765bp)
protein (255aa)
hypothetical protein HcinC1_08835 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI000197A148 id=130616 bin=ACD7 species=Helicobacter cinaedi genus=Helicobacter taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
hypothetical protein
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_423_11
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(12593..12805)
-----------------
DNA (213bp)
protein (71aa)
bsp6IM; cytosine specific DNA methyltransferase (BSP6IM); K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
hsm:HSM_0801 DNA-cytosine methyltransferase (EC:2.1.1.37); K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] id=130639 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
dcm; DNA (cytosine-5-)-methyltransferase family protein (EC:2.1.1.37)
Displaying 11 items

View Taxonomy