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RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_1
R_OD1_41_19, Parcubacteria, Bacteria

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59..3679
-----------------
DNA (3621bp)
protein (1207aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] id=5803388 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_2
R_OD1_41_19, Parcubacteria, Bacteria

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3681..5378
-----------------
DNA (1698bp)
protein (566aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
DNA primase id=2823715 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
DNA primase
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_3
R_OD1_41_19, Parcubacteria, Bacteria

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5375..6517
-----------------
DNA (1143bp)
protein (381aa)
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RNA polymerase sigma factor id=2823713 bin=GWC1_OD1_38_17 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RpoD subfamily RNA polymerase sigma-70 subunit
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_4
R_OD1_41_19, Parcubacteria, Bacteria

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6592..6822
-----------------
DNA (231bp)
protein (77aa)
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_5
R_OD1_41_19, Parcubacteria, Bacteria

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6823..7098
-----------------
DNA (276bp)
protein (92aa)
UPI0003D1C856 related cluster n=1 Tax=unknown RepID=UPI0003D1C856
addiction module toxin, RelE/StbE family Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
addiction module toxin, RelE/StbE family
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_6
R_OD1_41_19, Parcubacteria, Bacteria

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7095..7484
-----------------
DNA (390bp)
protein (130aa)
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_7
R_OD1_41_19, Parcubacteria, Bacteria

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7612..7842
-----------------
DNA (231bp)
protein (77aa)
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_8
R_OD1_41_19, Parcubacteria, Bacteria

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7858..9036
-----------------
DNA (1179bp)
protein (393aa)
tRNA-guanine transglycosylase Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Queuine tRNA-ribosyltransferase id=2130203 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
tRNA-guanine transglycosylase
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_9
R_OD1_41_19, Parcubacteria, Bacteria

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9122..9535
-----------------
DNA (414bp)
protein (138aa)
Putative uncharacterized protein n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BLW5_THEXL
hypothetical protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
hypothetical protein
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_10
R_OD1_41_19, Parcubacteria, Bacteria

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comp(9532..9750)
-----------------
DNA (219bp)
protein (73aa)
hypothetical protein; K09131 hypothetical protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
UPF0235 protein Cyan7822_2348 id=2192998 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_11
R_OD1_41_19, Parcubacteria, Bacteria

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comp(9755..10540)
-----------------
DNA (786bp)
protein (262aa)
hypothetical protein; K09807 hypothetical protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Uncharacterized protein id=3309931 bin=GWA1_ZB2_49_26 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_12
R_OD1_41_19, Parcubacteria, Bacteria

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10638..11054
-----------------
DNA (417bp)
protein (139aa)
RNA-binding proteins (RRM domain) Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Glycine-rich RNA-binding protein GRP1A id=3012495 bin=GWC1_OD1_38_17 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RNA-binding proteins (RRM domain)
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_13
R_OD1_41_19, Parcubacteria, Bacteria

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comp(11108..12349)
-----------------
DNA (1242bp)
protein (414aa)
Copper-containing nitrite reductase (EC:1.7.2.1) Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Copper-containing nitrite reductase (EC:1.7.2.1)
Copper-containing nitrite reductase n=1 Tax=Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) RepID=I1YEC6_METFJ
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_14
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

12365..12676
-----------------
DNA (312bp)
protein (104aa)
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_15
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

12729..13274
-----------------
DNA (546bp)
protein (182aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003644974
transcriptional regulator, PaaX family; K02616 phenylacetic acid degradation operon negative regulatory protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
PaaX family transcriptional regulator
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_16
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

13513..14376
-----------------
DNA (864bp)
protein (288aa)
Tagatose-bisphosphate aldolase; K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Tagatose-bisphosphate aldolase id=4790072 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Tagatose-bisphosphate aldolase
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_17
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

14380..15360
-----------------
DNA (981bp)
protein (327aa)
d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein id=3506657 bin=GWC1_OD1_38_17 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
d-isomer specific 2-hydroxyacid dehydrogenase nad-binding protein
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_18
R_OD1_41_19, Parcubacteria, Bacteria

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15431..16126
-----------------
DNA (696bp)
protein (232aa)
ctc; 50S ribosomal protein L25/general stress protein Ctc; K02897 large subunit ribosomal protein L25 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
50S ribosomal protein L25 id=3506654 bin=GWC1_OD1_38_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
ctc; 50S ribosomal protein L25/general stress protein Ctc
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_19
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

16195..17541
-----------------
DNA (1347bp)
protein (449aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00035E26E1
hypothetical protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_771_20
R_OD1_41_19, Parcubacteria, Bacteria

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comp(17531..17653)
-----------------
DNA (123bp)
protein (41aa)
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Displaying 20 items

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