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RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_1
R_OD1_41_19, Parcubacteria, Bacteria

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27..398
-----------------
DNA (372bp)
protein (124aa)
BSCG--ribosomal--protein--L14
50S ribosomal protein L14 n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI0003812F16
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
50S ribosomal protein L14
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_2
R_OD1_41_19, Parcubacteria, Bacteria

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406..711
-----------------
DNA (306bp)
protein (102aa)
BSCG--ribosomal--protein--L24
50S ribosomal protein L24 n=1 Tax=uncultured bacterium RepID=K2G649_9BACT
LSU ribosomal protein L24P Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
LSU ribosomal protein L24P
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_3
R_OD1_41_19, Parcubacteria, Bacteria

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734..1270
-----------------
DNA (537bp)
protein (179aa)
BSCG--ribosomal--protein--L5
50S ribosomal protein L5 n=1 Tax=Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108) RepID=E4Q827_CALH1
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
50S ribosomal protein L5
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_4
R_OD1_41_19, Parcubacteria, Bacteria

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1289..1474
-----------------
DNA (186bp)
protein (62aa)
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14 id=5803325 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
30S ribosomal protein S14
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_5
R_OD1_41_19, Parcubacteria, Bacteria

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1485..1874
-----------------
DNA (390bp)
protein (130aa)
BSCG--ribosomal--protein--S8
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
30S ribosomal protein S8 id=2824239 bin=GWC1_OD1_38_17 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
rpsH; 30S ribosomal protein S8
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_6
R_OD1_41_19, Parcubacteria, Bacteria

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1878..2420
-----------------
DNA (543bp)
protein (181aa)
BSCG--ribosomal--protein--L6P--L9E
50S ribosomal protein L6 (EC:3.1.3.45); K02933 large subunit ribosomal protein L6 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
50S ribosomal protein L6 (EC:3.1.3.45)
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 id=5803327 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_7
R_OD1_41_19, Parcubacteria, Bacteria

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2489..2854
-----------------
DNA (366bp)
protein (122aa)
BSCG--ribosomal--protein--L18
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 id=5802079 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
rplR; ribosomal protein L18
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_8
R_OD1_41_19, Parcubacteria, Bacteria

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2860..3330
-----------------
DNA (471bp)
protein (157aa)
BSCG--ribosomal--protein--S5
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 id=5803329 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
30S ribosomal protein S5
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_9
R_OD1_41_19, Parcubacteria, Bacteria

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3381..3812
-----------------
DNA (432bp)
protein (144aa)
BSCG--ribosomal--protein--L15
rplO; 50S ribosomal protein L15 RplO Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 id=5803330 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rplO; 50S ribosomal protein L15 RplO
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_10
R_OD1_41_19, Parcubacteria, Bacteria

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3891..5156
-----------------
DNA (1266bp)
protein (422aa)
BSCG--Preprotein--translocase--subunit--SecY
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5803331 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
preprotein translocase subunit SecY
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_11
R_OD1_41_19, Parcubacteria, Bacteria

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comp(5190..5651)
-----------------
DNA (462bp)
protein (154aa)
Small heat shock protein n=1 Tax=uncultured bacterium RepID=K2ENJ6_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Small heat shock protein
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_12
R_OD1_41_19, Parcubacteria, Bacteria

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comp(5667..6356)
-----------------
DNA (690bp)
protein (230aa)
putative protease (EC:3.4.-.-)
hypothetical protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
hypothetical protein id=5803648 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_13
R_OD1_41_19, Parcubacteria, Bacteria

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comp(6341..8422)
-----------------
DNA (2082bp)
protein (694aa)
BSCG--tRNA--synthetase--Valyl
ASCG--Valyl-tRNA--synthetase
valyl-tRNA synthetase (EC:6.1.1.9) Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
valyl-tRNA synthetase (EC:6.1.1.9)
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_14
R_OD1_41_19, Parcubacteria, Bacteria

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comp(8453..9736)
-----------------
DNA (1284bp)
protein (428aa)
ASCG--tRNA--N6-adenosine--threonylcarbamoyltransferase
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
hypothetical protein; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] id=5803482 bin=OD1_GWC2_34_28 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
O-sialoglycoprotein endopeptidase
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_15
R_OD1_41_19, Parcubacteria, Bacteria

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comp(9733..10602)
-----------------
DNA (870bp)
protein (290aa)
Phosphoesterase, dhha1 n=1 Tax=Microscilla marina ATCC 23134 RepID=A2A059_9BACT id=133324 bin=ACD81 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
putative phosphohydrolase Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
phosphohydrolase
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_trna_1
unknown

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10728..10801
-----------------
DNA (74bp)
transferRNA
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_trna_2
unknown

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10825..10899
-----------------
DNA (75bp)
transferRNA
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_16
R_OD1_41_19, Parcubacteria, Bacteria

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10984..12213
-----------------
DNA (1230bp)
protein (410aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000382A27F
putative DEAD/DEAH box helicase domain protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
ATP-dependent RNA helicase RhlE
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_17
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

12230..12415
-----------------
DNA (186bp)
protein (62aa)
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_18
R_OD1_41_19, Parcubacteria, Bacteria

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12422..12658
-----------------
DNA (237bp)
protein (79aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
hypothetical protein id=14425939 bin=bin1_lowGC species=Methanoplanus limicola genus=Methanoplanus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_19
R_OD1_41_19, Parcubacteria, Bacteria

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12894..13493
-----------------
DNA (600bp)
protein (200aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
hypothetical protein; K07002 id=66847 bin=ACD48 species=ACD48 genus=ACD48 taxon_order=ACD48 taxon_class=ACD48 phylum=OP11 tax=ACD48 organism_group=OP11 (Microgenomates) organism_desc=OP11
hypothetical protein
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_462_20
R_OD1_41_19, Parcubacteria, Bacteria

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13571..14137
-----------------
DNA (567bp)
protein (189aa)
helicase Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
AAA ATPase id=3012807 bin=GWC1_OD1_38_17 species=Weeksella virosa genus=Weeksella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
Displaying 22 items

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