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RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_1
unknown

Not on your lists

comp(2..64)
-----------------
DNA (63bp)
protein (21aa)

This feature has no annotations

RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_2
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists


comp(68..301)
-----------------
DNA (234bp)
protein (78aa)
BSCG--ribosomal--protein--S17
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
30S ribosomal protein S17 id=2824254 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
30S ribosomal protein S17
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_3
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists


comp(317..730)
-----------------
DNA (414bp)
protein (138aa)
BSCG--ribosomal--protein--L16--L10E
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 id=5227346 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
LSU ribosomal protein L16p
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_4
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists


comp(768..1421)
-----------------
DNA (654bp)
protein (218aa)
BSCG--ribosomal--protein--S3
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GUJ7_9ZZZZ
rpsC; 30S ribosomal protein S3 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
rpsC; 30S ribosomal protein S3
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_5
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists


comp(1418..1759)
-----------------
DNA (342bp)
protein (114aa)
BSCG--ribosomal--protein--L22
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
50S ribosomal protein L22 id=2824330 bin=GWC1_OD1_38_17 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
50S ribosomal protein L22
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_6
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists


comp(1761..2102)
-----------------
DNA (342bp)
protein (114aa)
BSCG--ribosomal--protein--S19
rpsS; ribosomal protein S19 (BS19) Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
30S ribosomal protein S19 id=5227349 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
rpsS; ribosomal protein S19 (BS19)
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_7
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists


comp(2115..2945)
-----------------
DNA (831bp)
protein (277aa)
BSCG--ribosomal--protein--L2
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Translation protein SH3-like id=5802990 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
50S ribosomal protein L2
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_8
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists


comp(2980..3309)
-----------------
DNA (330bp)
protein (110aa)
BSCG--ribosomal--protein--L23
ribosomal protein L25/L23; K02892 large subunit ribosomal protein L23 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 id=5227351 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
50S ribosomal protein L23
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_9
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(3393..4688)
-----------------
DNA (1296bp)
protein (432aa)
id=3486137 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
id=3486137 bin=GWA1_ZB2_49_26 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_10
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(5207..5704)
-----------------
DNA (498bp)
protein (166aa)
seg Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
seg id=5803121 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_11
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(5806..6522)
-----------------
DNA (717bp)
protein (239aa)
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_12
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(6670..7218)
-----------------
DNA (549bp)
protein (183aa)
transmembrane_regions Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
transmembrane_regions id=5227505 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_13
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(7215..7337)
-----------------
DNA (123bp)
protein (41aa)
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_14
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(7428..8057)
-----------------
DNA (630bp)
protein (210aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
protein of unknown function DUF88 id=133582 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_15
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(8083..9330)
-----------------
DNA (1248bp)
protein (416aa)
type II secretion system protein; K02653 type IV pilus assembly protein PilC Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
type IV pilin; K02653 type IV pilus assembly protein PilC id=5227504 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_16
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(9323..11074)
-----------------
DNA (1752bp)
protein (584aa)
Tfp pilus assembly protein PilB; K02652 type IV pilus assembly protein PilB Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Tfp pilus assembly protein PilB; K02652 type IV pilus assembly protein PilB id=5803124 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
secretion system protein E
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_17
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists


comp(11076..13517)
-----------------
DNA (2442bp)
protein (814aa)
BSCG--gyrA
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
DNA gyrase subunit A (EC:5.99.1.3)
id=5227153 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_18
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(13501..13779)
-----------------
DNA (279bp)
protein (93aa)
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_19
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(13815..14426)
-----------------
DNA (612bp)
protein (204aa)
Zn-dependent hydrolase of the beta-lactamase fold-like protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
id=5803530 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Zn-dependent hydrolase of the beta-lactamase fold-like protein
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_20
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(14620..14733)
-----------------
DNA (114bp)
protein (38aa)
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_21
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(14740..15792)
-----------------
DNA (1053bp)
protein (351aa)
hypothetical protein
Putative uncharacterized protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Putative uncharacterized protein id=1815385 bin=GWE2_Bacteroidetes_40_15 species=unknown genus=Pseudogulbenkiania taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_1266_22
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

16033..16587
-----------------
DNA (555bp)
protein (185aa)
rpfA; 30S ribosomal protein S1 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RNA binding S1 domain protein id=5227156 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RNA binding S1 protein
Displaying 22 items

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