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RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_788

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_788_1
R_OD1_41_19, Parcubacteria, Bacteria

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comp(88..801)
-----------------
DNA (714bp)
protein (238aa)
rsuA; 16S rRNA uridine-516 pseudouridylate synthase-like protein (EC:4.2.1.70); K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Pseudouridine synthase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I9M3_9CLOT id=8125 bin=ACD15 species=Clostridium sp. 7_2_43FAA genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
pseudouridine synthase
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_788_2
R_OD1_41_19, Parcubacteria, Bacteria

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955..1554
-----------------
DNA (600bp)
protein (200aa)
Uncharacterized protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Uncharacterized protein id=5800831 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_788_3
R_OD1_41_19, Parcubacteria, Bacteria

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1557..2393
-----------------
DNA (837bp)
protein (279aa)
site-specific DNA-methyltransferase (adenine-specific) (EC:2.1.1.72); K07319 putative adenine-specific DNA-methyltransferase [EC:2.1.1.72] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
hpaIM; modification methylase HpaI (EC:2.1.1.72)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9E2U5_9BURK
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_788_4
R_OD1_41_19, Parcubacteria, Bacteria

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2522..3016
-----------------
DNA (495bp)
protein (165aa)
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_788_5
R_OD1_41_19, Parcubacteria, Bacteria

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3102..3596
-----------------
DNA (495bp)
protein (165aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000367694C
hemerythrin HHE cation binding domain protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
hemerythrin HHE cation binding domain protein
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_788_6
R_OD1_41_19, Parcubacteria, Bacteria

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comp(3598..4602)
-----------------
DNA (1005bp)
protein (335aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
trpS; Tryptophan-tRNA ligase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=uncultured bacterium RepID=K2G8J8_9BACT
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_788_7
R_OD1_41_19, Parcubacteria, Bacteria

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comp(4633..6321)
-----------------
DNA (1689bp)
protein (563aa)
RNA-metabolising metallo-beta-lactamase; K12574 ribonuclease J [EC:3.1.-.-] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RNA-metabolising metallo-beta-lactamase id=4965045 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RNA-metabolising metallo-beta-lactamase
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_788_trna_1
unknown

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comp(6360..6443)
-----------------
DNA (84bp)
transferRNA
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_788_8
R_OD1_41_19, Parcubacteria, Bacteria

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comp(6452..8197)
-----------------
DNA (1746bp)
protein (582aa)
putative periplasmic oligopeptide-binding protein of oligopeptide ABC transporter; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Extracellular solute-binding protein family 5 id=4965044 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
putative periplasmic oligopeptide-binding protein of oligopeptide ABC transporter
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_788_9
R_OD1_41_19, Parcubacteria, Bacteria

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comp(8213..8437)
-----------------
DNA (225bp)
protein (75aa)
secG; Preprotein translocase, SecG subunit Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG id=5802335 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
preprotein translocase subunit SecG
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_788_10
R_OD1_41_19, Parcubacteria, Bacteria

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comp(8543..9400)
-----------------
DNA (858bp)
protein (286aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZ26_9BACT
transcriptional regulator, MarR family; K04096 DNA processing protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
transcriptional regulator, MarR family
RIFCSPHIGHO2_02_OD1_41_19_rifcsphigho2_02_sub10_scaffold_788_11
R_OD1_41_19, Parcubacteria, Bacteria

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9436..9699
-----------------
DNA (264bp)
protein (88aa)
seryl-tRNA synthetase (EC:6.1.1.11) Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
seryl-tRNA synthetase (EC:6.1.1.11)
hypothetical protein n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B5775C
Displaying 12 items

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