ggKbase home page

rifcsphigho2_02_scaffold_4660

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_4660_1

Not on your lists

comp(761..1657)
-----------------
DNA (897bp)
protein (299aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51375.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
hypothetical protein id=5048110 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_4660_2
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(2288..2938)
-----------------
DNA (651bp)
protein (217aa)
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
hypothetical protein; K07002 id=5044352 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
cytidylate kinase
rifcsphigho2_02_scaffold_4660_3
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists

comp(2943..4337)
-----------------
DNA (1395bp)
protein (465aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=CG_Pacearch_04
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase id=5799784 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_4660_4
R_RIF_OD1_07_41_9, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

4436..4675
-----------------
DNA (240bp)
protein (80aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_07_41_9_curated
rifcsphigho2_02_scaffold_4660_5
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists


4871..7225
-----------------
DNA (2355bp)
protein (785aa)
valS; valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=18248281 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
valS; valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=AR5
valyl tRNA-synthetase (EC:6.1.1.9)
rifcsphigho2_02_scaffold_4660_6

Not on your lists

7303..8523
-----------------
DNA (1221bp)
protein (407aa)
peptide chain release factor 1; K03265 peptide chain release factor subunit 1 id=5044348 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Peptide chain release factor subunit 1 {ECO:0000313|EMBL:KHO48283.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
Peptide chain release factor 1 (eRF1)
rifcsphigho2_02_scaffold_4660_7
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists


comp(8690..10135)
-----------------
DNA (1446bp)
protein (482aa)
prolyl-tRNA synthetase (EC:6.1.1.15 6.1.1.16); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] Tax=CG_CPArch01-01
Proline--tRNA ligase n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IC17_ACIB4
prolyl-tRNA synthetase
rifcsphigho2_02_scaffold_4660_8
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

10180..10485
-----------------
DNA (306bp)
protein (102aa)
Tax=RBG_16_Micrarchaeota_36_9_curated
rifcsphigho2_02_scaffold_4660_9
unknown

Not on your lists

comp(10489..10968)
-----------------
DNA (480bp)
protein (160aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4660_10
unknown

Not on your lists

comp(11136..11465)
-----------------
DNA (330bp)
protein (110aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4660_11
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11604..11915
-----------------
DNA (312bp)
protein (104aa)
Putative transcriptional regulator n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K5K0_CLOPA
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGK98432.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum
rifcsphigho2_02_scaffold_4660_12
unknown

Not on your lists

comp(11958..12194)
-----------------
DNA (237bp)
protein (79aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4660_13

Not on your lists

12344..13327
-----------------
DNA (984bp)
protein (328aa)
Transcriptional regulator
Transcription regulator TrmB, N-terminal id=5041732 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO47984.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
rifcsphigho2_02_scaffold_4660_14
unknown

Not on your lists

13517..13636
-----------------
DNA (120bp)
protein (40aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4660_15
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

13721..14944
-----------------
DNA (1224bp)
protein (408aa)
hypothetical protein; K06915 id=18248165 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
hypothetical protein; K06915 Tax=AR5
hypothetical protein
rifcsphigho2_02_scaffold_4660_16
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

Not on your lists

15034..15282
-----------------
DNA (249bp)
protein (83aa)
transcription regulator, SpoVT/AbrB family Tax=RBG_16_Micrarchaeota_49_10_curated
rifcsphigho2_02_scaffold_4660_17
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

Not on your lists

15279..15662
-----------------
DNA (384bp)
protein (128aa)
PIN domain protein n=1 Tax=mine drainage metagenome RepID=T1B5Y6_9ZZZZ
PIN domain-containing protein; K07062 Tax=RBG_16_Micrarchaeota_49_10_curated
nucleic acid-binding protein
rifcsphigho2_02_scaffold_4660_18
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(16081..16686)
-----------------
DNA (606bp)
protein (202aa)
Methyltransferase type 11 id=4924041 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_02_scaffold_4660_19
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

comp(16958..17362)
-----------------
DNA (405bp)
protein (135aa)
Putative uncharacterized protein id=18248560 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Putative uncharacterized protein Tax=AR5
rifcsphigho2_02_scaffold_4660_20
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

comp(17417..18112)
-----------------
DNA (696bp)
protein (232aa)
Rhomboid family protein; K07059 id=18248168 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Rhomboid family protein; K07059 Tax=AR5
Rhomboid family protein
rifcsphigho2_02_scaffold_4660_21

Not on your lists

18424..19527
-----------------
DNA (1104bp)
protein (368aa)
Cell division protein FtsZ 2 id=4759206 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU003360}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
cell division protein FtsZ
rifcsphigho2_02_scaffold_4660_22
unknown

Not on your lists

comp(19643..19969)
-----------------
DNA (327bp)
protein (109aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4660_23
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

comp(20025..20807)
-----------------
DNA (783bp)
protein (261aa)
ATP-nad/acox kinase; K00858 NAD+ kinase [EC:2.7.1.23] Tax=AR5
Probable inorganic polyphosphate/ATP-NAD kinase id=4909349 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
ATP-nad/acox kinase
rifcsphigho2_02_scaffold_4660_24
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

20826..23093
-----------------
DNA (2268bp)
protein (756aa)
BNR/Asp-box repeat domain protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZWP5_9BACT
BNR/Asp-box repeat domain protein {ECO:0000313|EMBL:EAY25177.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC
sulfocyanin
rifcsphigho2_02_scaffold_4660_25
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

23796..24149
-----------------
DNA (354bp)
protein (118aa)
Putative uncharacterized protein id=18248575 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Putative uncharacterized protein Tax=AR5
rifcsphigho2_02_scaffold_4660_26

Not on your lists

24266..26542
-----------------
DNA (2277bp)
protein (759aa)
ATPase AAA (EC:3.6.1.3); K13525 transitional endoplasmic reticulum ATPase id=18248574 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Transitional endoplasmic reticulum ATPase {ECO:0000313|EMBL:KHO47409.1}; EC=3.6.1.3 {ECO:0000313|EMBL:KHO47409.1};; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
ATPase AAA (EC:3.6.1.3)
rifcsphigho2_02_scaffold_4660_27
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26781..27455
-----------------
DNA (675bp)
protein (225aa)
inositol-1-monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] Tax=GWF1_Xanthomonadales_69_6_curated
Probable inositol monophosphatase protein id=2489101 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
inositol monophosphatase/fructose-1,6-bisphosphatase family protein
rifcsphigho2_02_scaffold_4660_28
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

comp(27567..28103)
-----------------
DNA (537bp)
protein (179aa)
id=4201025 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
alias=gwa2_scaffold_2089_10 Tax=AR5
rifcsphigho2_02_scaffold_4660_29
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

28143..30047
-----------------
DNA (1905bp)
protein (635aa)
ERCC2/XPD/Rad3-related DNA repair helicase; K10844 DNA excision repair protein ERCC-2 [EC:3.6.4.12] id=5045763 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA repair helicase rad3 Tax=CG_Woesearch_02
ATP dependent helicase
rifcsphigho2_02_scaffold_4660_30

Not on your lists

30205..30648
-----------------
DNA (444bp)
protein (148aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003718CE3
Putative uncharacterized protein {ECO:0000313|EMBL:EFK96334.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
ATPase AAA
Displaying items 1-30 of 33 in total

View Taxonomy