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rifcsphigho2_02_scaffold_7720

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_7720_1

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comp(523..1080)
-----------------
DNA (558bp)
protein (186aa)
Putative transposase n=1 Tax=Thermoproteus tenax (strain ATCC 35583 / NBRC 100435 / JCM 9277 / Kra 1) RepID=G4RLN5_THETK
Marine sediment metagenome DNA, contig: S03H2_L00709 {ECO:0000313|EMBL:GAH41150.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
putative transposase
rifcsphigho2_02_scaffold_7720_2
unknown

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comp(1132..1767)
-----------------
DNA (636bp)
protein (212aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7720_3
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(2034..2810)
-----------------
DNA (777bp)
protein (259aa)
rpoD; DNA-directed RNA polymerase subunit D (EC:2.7.7.6); K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=AR5
rpoD; DNA-directed RNA polymerase subunit D (EC:2.7.7.6)
DNA-directed RNA polymerase subunit D id=4922286 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsphigho2_02_scaffold_7720_4

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comp(2978..3361)
-----------------
DNA (384bp)
protein (128aa)
rps11p; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 id=18248039 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
rps11p; 30S ribosomal protein S11
rifcsphigho2_02_scaffold_7720_5
Methanothermobacter marburgensis, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(3549..4025)
-----------------
DNA (477bp)
protein (159aa)
rps4p; 30S ribosomal protein S4p
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 id=18248037 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000256|SAAS:SAAS00016650}; TaxID=79929 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methan
rifcsphigho2_02_scaffold_7720_6
unknown

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comp(4029..4184)
-----------------
DNA (156bp)
protein (52aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7720_7
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(4237..4707)
-----------------
DNA (471bp)
protein (157aa)
30S ribosomal protein S13 id=4922290 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
ribosomal protein S13P Rps13p; K02952 small subunit ribosomal protein S13 Tax=AR5
30S ribosomal protein S13
rifcsphigho2_02_scaffold_7720_8

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4824..5282
-----------------
DNA (459bp)
protein (153aa)
Putative signal transduction protein with CBS domains id=4922291 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Signal transduction protein with CBS protein {ECO:0000313|EMBL:KHO48038.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
signal transduction protein with CBS domains
rifcsphigho2_02_scaffold_7720_9
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(5296..6057)
-----------------
DNA (762bp)
protein (254aa)
translation initiation factor IF-2; K03237 translation initiation factor 2 subunit 1 id=5042078 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
translation initiation factor IF-2; K03237 translation initiation factor 2 subunit 1 Tax=AR5
translation initiation factor IF-2
rifcsphigho2_02_scaffold_7720_10
Candidatus Parvarchaeum acidiphilum, Candidatus Parvarchaeum, Parvarchaeota, Archaea

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comp(6337..6501)
-----------------
DNA (165bp)
protein (55aa)
30S ribosomal protein S27e n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEZ2_9EURY
30S ribosomal protein S27e {ECO:0000256|HAMAP-Rule:MF_00371}; TaxID=662760 species="Archaea; Parvarchaeota; Candidatus Parvarchaeum.;" source="Candidatus Parvarchaeum acidiphilum ARMAN-4.;"
rps27e; 30S ribosomal protein S27
rifcsphigho2_02_scaffold_7720_11
AR5, Aenigmarchaeota, DPANN, Archaea

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6572..6898
-----------------
DNA (327bp)
protein (109aa)
50S ribosomal protein L7Ae; K02936 large subunit ribosomal protein L7Ae id=5042082 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
50S ribosomal protein L7Ae; K02936 large subunit ribosomal protein L7Ae Tax=AR5
50S ribosomal protein L7Ae
rifcsphigho2_02_scaffold_7720_12
AR5, Aenigmarchaeota, DPANN, Archaea

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7063..7344
-----------------
DNA (282bp)
protein (94aa)
30S ribosomal protein S28e id=4922292 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
ribosomal protein S28E/S33 Tax=AR5
rps28e; 30S ribosomal protein S28e
rifcsphigho2_02_scaffold_7720_13
CG_Woesearch_02, Woesearchaeota, Archaea

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7554..7727
-----------------
DNA (174bp)
protein (58aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000373F97F
rpl24E; 50S ribosomal protein L24E; K02896 large subunit ribosomal protein L24e Tax=CG_Woesearch_02
50S ribosomal protein L24e
rifcsphigho2_02_scaffold_7720_14
AR5, Aenigmarchaeota, DPANN, Archaea

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8037..8825
-----------------
DNA (789bp)
protein (263aa)
Putative uncharacterized protein id=4922323 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
hypothetical protein; K07159 Tax=AR5
hypothetical protein
rifcsphigho2_02_scaffold_7720_15
AR5, Aenigmarchaeota, DPANN, Archaea

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8937..9269
-----------------
DNA (333bp)
protein (111aa)
LSU ribosomal protein L18AE id=18248041 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
LSU ribosomal protein L18AE Tax=AR5
rifcsphigho2_02_scaffold_7720_16
AR5, Aenigmarchaeota, DPANN, Archaea

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9366..9863
-----------------
DNA (498bp)
protein (166aa)
50S ribosomal protein L13P id=4922284 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
RplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=AR5
LSU ribosomal protein L13Ae (L13p)
rifcsphigho2_02_scaffold_7720_17
AR5, Aenigmarchaeota, DPANN, Archaea

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9977..10468
-----------------
DNA (492bp)
protein (164aa)
30S ribosomal protein S9 id=4922282 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=AR5
30S ribosomal protein S9
rifcsphigho2_02_scaffold_7720_18

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10604..10798
-----------------
DNA (195bp)
protein (65aa)
DNA-directed RNA polymerase subunit N {ECO:0000256|HAMAP-Rule:MF_00250}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00250};; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
DNA-directed RNA polymerase subunit N id=4922281 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
DNA-directed RNA polymerase subunit N
rifcsphigho2_02_scaffold_7720_19
unknown

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comp(10806..11222)
-----------------
DNA (417bp)
protein (139aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7720_20
unknown

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11453..12337
-----------------
DNA (885bp)
protein (295aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7720_21
AR13, Pacearchaeaota, DPANN, Archaea

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12365..12916
-----------------
DNA (552bp)
protein (184aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000367694C
hypothetical protein Tax=AR13
cation-binding protein
rifcsphigho2_02_scaffold_7720_22
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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comp(13060..13479)
-----------------
DNA (420bp)
protein (140aa)
hypothetical protein
Putative uncharacterized protein id=2898907 bin=PER_GWC2_41_7 species=Legionella drancourtii genus=Legionella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Tax=RBG_16_Micrarchaeota_49_10_curated
rifcsphigho2_02_scaffold_7720_23
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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comp(13493..14017)
-----------------
DNA (525bp)
protein (175aa)
hypothetical protein
id=2898906 bin=PER_GWC2_41_7 species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
id=2898906 Tax=RBG_16_Micrarchaeota_49_10_curated
rifcsphigho2_02_scaffold_7720_24
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(14038..14436)
-----------------
DNA (399bp)
protein (133aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ72402.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;"
rifcsphigho2_02_scaffold_7720_25
unknown

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comp(14625..14816)
-----------------
DNA (192bp)
protein (64aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7720_26

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comp(14920..15660)
-----------------
DNA (741bp)
protein (247aa)
hypothetical protein
id=2898902 bin=PER_GWC2_41_7 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Uncharacterized protein {ECO:0000313|EMBL:AJF62773.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_02_scaffold_7720_27
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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comp(15717..16478)
-----------------
DNA (762bp)
protein (254aa)
hypothetical protein
id=4010370 Tax=RBG_16_Micrarchaeota_49_10_curated
transmembrane_regions 21..43 id=725232 bin=RAAC2_WWE3 species=RAAC2_WWE3 genus=RAAC2_WWE3 taxon_order=RAAC2_WWE3 taxon_class=RAAC2_WWE3 phylum=WWE3 tax=RAAC2_WWE3 organism_group=WWE3
rifcsphigho2_02_scaffold_7720_28
AR6, Pacearchaeaota, DPANN, Archaea

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comp(16739..17233)
-----------------
DNA (495bp)
protein (165aa)
Uncharacterized protein id=5800405 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
regulatory protein GntR HTH
Tax=AR6
rifcsphigho2_02_scaffold_7720_29
AR5, Aenigmarchaeota, DPANN, Archaea

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17266..18228
-----------------
DNA (963bp)
protein (321aa)
replication factor C large subunit; K04800 replication factor C large subunit id=18248048 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
replication factor C large subunit; K04800 replication factor C large subunit Tax=AR5
replication factor C large subunit
rifcsphigho2_02_scaffold_7720_30
Thermococcus kodakarensis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(18328..18744)
-----------------
DNA (417bp)
protein (139aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Putative toxin VapC {ECO:0000256|HAMAP-Rule:MF_
Ribonuclease VapC n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=Q5JEB5_THEKO
nucleic acid-binding protein
Displaying items 1-30 of 36 in total

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