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rifcsphigho2_02_scaffold_6787

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_6787_trna_1
unknown

Not on your lists

comp(267..359)
DNA (93bp)
transferRNA
rifcsphigho2_02_scaffold_6787_1
CG_Woesearch_02, Woesearchaeota, Archaea

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730..1473
DNA (744bp) protein (248aa)
hypothetical protein Tax=CG_Woesearch_02
condensin subunit ScpA; K05896 segregation and condensation protein A id=5048743 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Chromosome segregation and condensation protein ScpA
rifcsphigho2_02_scaffold_6787_2
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1684..2646
DNA (963bp) protein (321aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
Ribose-phosphate pyrophosphokinase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CLR4_DESK7
rifcsphigho2_02_scaffold_6787_3
CG_Woesearch_02, Woesearchaeota, Archaea

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2652..3074
DNA (423bp) protein (141aa)
Prefoldin subunit alpha n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=PFDA_METKA id=5103279 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
prefoldin, archaeal alpha subunit/eukaryotic subunit 5 Tax=CG_Woesearch_02
Prefoldin subunit alpha
rifcsphigho2_02_scaffold_6787_4
CG_Woesearch_02, Woesearchaeota, Archaea

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3176..4390
DNA (1215bp) protein (405aa)
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor Tax=CG_Woesearch_02
ftsY; signal recognition particle receptor FtsY; K03110 fused signal recognition particle receptor id=5050700 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Signal recognition particle GTPase
rifcsphigho2_02_scaffold_6787_5
unknown

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comp(4404..6170)
DNA (1767bp) protein (589aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6787_6
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(6322..6987)
DNA (666bp) protein (222aa)
ski2-like helicase; K03726 helicase [EC:3.6.4.-] Tax=CG_Woesearch_02
Putative ski2-type helicase id=5800569 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ski2-type helicase
rifcsphigho2_02_scaffold_6787_7
CG_Woesearch_02, Woesearchaeota, Archaea

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7079..8023
DNA (945bp) protein (315aa)
Galactose-1-phosphate uridylyltransferase; K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=CG_Woesearch_02
Galactose-1-phosphate uridylyltransferase; K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] id=5043631 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
galactose-1-phosphate uridylyltransferase
rifcsphigho2_02_scaffold_6787_8
CG_Woesearch_01, Woesearchaeota, Archaea

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8026..8892
DNA (867bp) protein (289aa)
glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2] Tax=CG_Woesearch_01
Putative glucokinase n=1 Tax=Clostridium sporogenes PA 3679 RepID=G9EWY2_CLOSG
glucokinase
rifcsphigho2_02_scaffold_6787_9
CG_Elusi_02, Elusimicrobia, Bacteria

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comp(8893..9639)
DNA (747bp) protein (249aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0ANS2_IGNAJ
gpm; Phosphoglycerate mutase 1 Tax=CG_Elusi_02
gpm; phosphoglycerate mutase 1
rifcsphigho2_02_scaffold_6787_10
Thermoplasmatales archaeon SCGC AB-539-N05, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(9655..10929)
DNA (1275bp) protein (425aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000
enolase (EC:4.2.1.11)
Enolase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TBS3_9EURY
rifcsphigho2_02_scaffold_6787_11
unknown

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comp(11064..11381)
DNA (318bp) protein (106aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6787_12
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(11489..12289)
DNA (801bp) protein (267aa)
hypothetical protein; K07159 Tax=CG_Woesearch_02
hypothetical protein; K07159 id=5048712 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_6787_13
AR15, Woesearchaeaota, DPANN, Archaea

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comp(12286..12459)
DNA (174bp) protein (58aa)
UPI000021D016 related cluster id=5800825 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
UPI000021D016 related cluster Tax=AR15
rifcsphigho2_02_scaffold_6787_14
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(12456..13238)
DNA (783bp) protein (261aa)
translation initiation factor 2 subunit alpha (aeif-2a); K03237 translation initiation factor 2 subunit 1 Tax=CG_Woesearch_02
translation initiation factor 2 subunit alpha; K03237 translation initiation factor 2 subunit 1 id=5048710 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Translation initiation factor 2 subunit alpha
rifcsphigho2_02_scaffold_6787_15
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(13392..13577)
DNA (186bp) protein (62aa)
rps27e; 30S ribosomal protein S27e; K02978 small subunit ribosomal protein S27e Tax=CG_Woesearch_01
30S ribosomal protein S27e id=5800827 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S27e
rifcsphigho2_02_scaffold_6787_16
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(13623..13835)
DNA (213bp) protein (71aa)
LSU ribosomal protein L44E
LSU ribosomal protein l44e; K02929 large subunit ribosomal protein L44e Tax=CG_Woesearch_01
50S ribosomal protein L44e id=5800650 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_6787_17
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(14245..14877)
DNA (633bp) protein (211aa)
hypothetical protein
hypothetical protein Tax=RBG_13_Woesearchaeota_36_6_curated
id=5047461 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_6787_18

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14953..15756
DNA (804bp) protein (268aa)
Marine sediment metagenome DNA, contig: S01H1_L06089 {ECO:0000313|EMBL:GAF71098.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
Radical SAM domain protein id=5800567 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
radical SAM domain-containing protein
rifcsphigho2_02_scaffold_6787_19
CG_Woesearch_02, Woesearchaeota, Archaea

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15840..16148
DNA (309bp) protein (103aa)
radical SAM protein; K06935 Tax=CG_Woesearch_02
radical SAM protein; K06935 id=5048707 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
radical SAM protein
rifcsphigho2_02_scaffold_6787_20
unknown

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comp(16243..17337)
DNA (1095bp) protein (365aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6787_21
RBG_16_OP11_45_19_curated, Microgenomates, Bacteria

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comp(17576..18967)
DNA (1392bp) protein (464aa)
polysaccharide deactylase family protein Tax=RBG_16_OP11_45_19_curated
rifcsphigho2_02_scaffold_6787_22
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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comp(19085..21709)
DNA (2625bp) protein (875aa)
S-layer structural protein {ECO:0000313|EMBL:KKR78741.1}; Flags: Fragment;; TaxID=1618734 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_40_9.;"
id=5047464 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_6787_23
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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22223..23665
DNA (1443bp) protein (481aa)
hypothetical protein Tax=GWA2_OD1_40_9
Putative uncharacterized protein id=2487770 bin=GWC2_Planctomycete_KSU_39_26 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
hypothetical protein
rifcsphigho2_02_scaffold_6787_24
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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comp(23775..25553)
DNA (1779bp) protein (593aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR78739.1}; TaxID=1618734 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_40_9.;"
Putative uncharacterized protein id=4330649 bin=GWA2_Planctomycete_KSU_39_15 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
hypothetical protein
rifcsphigho2_02_scaffold_6787_25
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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25921..26664
DNA (744bp) protein (248aa)
Transposase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TH27_METAC
hypothetical protein
Transposase {ECO:0000313|EMBL:AAM04474.1}; Uncharacterized protein {ECO:0000313|EMBL:AAM06202.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae;
Displaying 26 items

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