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rifcsphigho2_02_scaffold_4020

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_4020_1
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(3..1655)
DNA (1653bp) protein (551aa)
secd/secf/secdf export membrane protein; K03072 preprotein translocase subunit SecD Tax=CG_Woesearch_02
hypothetical protein; K03072 preprotein translocase subunit SecD id=5047439 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
SecD/SecF/SecDF export membrane protein
rifcsphigho2_02_scaffold_4020_2
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(1652..2581)
DNA (930bp) protein (310aa)
preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF Tax=CG_Woesearch_02
preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF id=5048448 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein-export membrane protein SecF
rifcsphigho2_02_scaffold_4020_3
unknown

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2774..3763
DNA (990bp) protein (330aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4020_4

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comp(3766..5484)
DNA (1719bp) protein (573aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227};
CTP synthase (EC:6.3.4.2)
CTP synthetase n=1 Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B51BBE
rifcsphigho2_02_scaffold_4020_5
AR11, Woesearchaeaota, DPANN, Archaea

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comp(5800..6387)
DNA (588bp) protein (196aa)
hypothetical protein Tax=AR11
peptidase M50 id=5047436 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_4020_6
AR11, Woesearchaeaota, DPANN, Archaea

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comp(6390..7253)
DNA (864bp) protein (288aa)
id=5047432 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR11
rifcsphigho2_02_scaffold_4020_7
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(7255..7848)
DNA (594bp) protein (198aa)
seg id=5800296 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=CG_Woesearch_02
rifcsphigho2_02_scaffold_4020_8
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(8261..8914)
DNA (654bp) protein (218aa)
deoxyribonuclease V (EC:3.1.21.7); K05982 deoxyribonuclease V [EC:3.1.21.7] Tax=RBG_13_Woesearchaeota_36_6_curated
Endonuclease V n=1 Tax=uncultured archaeon RepID=D1JA81_9ARCH
deoxyribonuclease V
rifcsphigho2_02_scaffold_4020_9
GWA2_OP11_40_7b, Woesebacteria, Microgenomates, Bacteria

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comp(9220..9624)
DNA (405bp) protein (135aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR73123.1}; TaxID=1618562 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA2_40_7.;"
id=5799756 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_4020_10
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(9721..11592)
DNA (1872bp) protein (624aa)
hypothetical protein; K10844 DNA excision repair protein ERCC-2 [EC:3.6.4.12] Tax=RBG_13_Woesearchaeota_36_6_curated
ATP dependent helicase id=5799755 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ATP dependent helicase
rifcsphigho2_02_scaffold_4020_11
unknown

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comp(11637..12512)
DNA (876bp) protein (292aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4020_trna_1
unknown

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12641..12718
DNA (78bp)
transferRNA
rifcsphigho2_02_scaffold_4020_12
AR15, Woesearchaeaota, DPANN, Archaea

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comp(12732..13358)
DNA (627bp) protein (209aa)
seg id=5799965 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
seg Tax=AR15
rifcsphigho2_02_scaffold_4020_13
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

13492..13902
DNA (411bp) protein (137aa)
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=CG_Woesearch_01
Hit-like protein involved in cell-cycle regulation
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation id=5240730 bin=GW2011_AR10_complete species=Ignicoccus hospitalis genus=Ignicoccus taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_4020_14

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13972..14586
DNA (615bp) protein (205aa)
ATP:corrinoid adenosyltransferase, cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:KHO50752.1}; EC=2.5.1.17 {ECO:0000313|EMBL:KHO50752.1};; TaxID=1579374 species="Archaea.;" source="archaeon GW2011
ATP:corrinoid adenosyltransferase n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D2M1_PELTS
BtuR; ATP:corrinoid adenosyltransferase
rifcsphigho2_02_scaffold_4020_15
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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14589..16460
DNA (1872bp) protein (624aa)
ribonucleoside-diphosphate reductase; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=RBG_16_Bathyarchaeota_48_13_curated
nrdA; ribonucleoside-diphosphate reductase alpha chain (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PDG5_DEFDS
rifcsphigho2_02_scaffold_4020_16
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

16470..17195
DNA (726bp) protein (242aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] Tax=AR11
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] id=14425618 bin=bin1_lowGC species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=bin1_lowGC organism_group=Unknown_CP
thermostable 8-oxoguanine DNA glycosylase
rifcsphigho2_02_scaffold_4020_17
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

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comp(17210..17551)
DNA (342bp) protein (114aa)
panD; aspartate 1-decarboxylase; K01579 aspartate 1-decarboxylase [EC:4.1.1.11] Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI000367C27D
panD; aspartate 1-decarboxylase
rifcsphigho2_02_scaffold_4020_18
RIFOXYD2_FULL_RIF_OD1_02_43_21_curated, RIF-OD1-2, Parcubacteria, Bacteria

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17641..18699
DNA (1059bp) protein (353aa)
[pyruvate formate-lyase]-activating enzyme; K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4] Tax=RIFOXYD2_FULL_RIF_OD1_02_43_21_curated
Radical SAM domain protein n=1 Tax=Sulfurimonas autotrophica (strain ATCC BAA-671 / DSM 16294 / JCM 11897 / OK10) RepID=E0UV02_SULAO
radical SAM protein
rifcsphigho2_02_scaffold_4020_19
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

18803..19366
DNA (564bp) protein (188aa)
prx2-1; 2-cysteine peroxiredoxin (EC:1.11.1.15); K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15] Tax=CG_Aenigma_01
prx2-1; 2-cysteine peroxiredoxin (EC:1.11.1.15)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036CB8B2
rifcsphigho2_02_scaffold_4020_20
RBG_13_Planctomycetes_44_8b_curated, Physcisphaerae, Planctomycetes, Bacteria

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19376..19885
DNA (510bp) protein (170aa)
Ferritin-like protein Tax=RBG_13_Planctomycetes_44_8b_curated
Ferritin-like protein id=4722874 bin=GWA2_Elusi_like_61_42 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi
Ferritin-like protein
rifcsphigho2_02_scaffold_4020_21

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19989..20654
DNA (666bp) protein (222aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Uncharacterized protein {ECO:0000313|EMBL:KKL67590.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Endonuclease III id=3984565 bin=GWF2_OP3_43_52 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rifcsphigho2_02_scaffold_4020_22
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

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20693..20887
DNA (195bp) protein (65aa)
Putative cobalt/zinc/cadmium cation efflux pump id=4506793 bin=GWC2_Deltaproteobacteria_42_51 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
cation transporter Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
putative cation efflux protein
Displaying 23 items

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