ggKbase home page

rifcsphigho2_02_scaffold_4209

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_4209_1
unknown

Not on your lists

374..718
DNA (345bp) protein (115aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4209_2

Not on your lists

732..2321
DNA (1590bp) protein (530aa)
Uncharacterized protein n=1 Tax=Bacteroides vulgatus dnLKV7 RepID=R9HXH0_BACVU
Marine sediment metagenome DNA, contig: S03H2_L07352 {ECO:0000313|EMBL:GAH40886.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
hypothetical protein
rifcsphigho2_02_scaffold_4209_3
R_RIF_OD1_07_48_27b, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

2399..3217
DNA (819bp) protein (273aa)
thyA; Thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_48_27b_curated
thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45] id=5046293 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
thymidylate synthase (EC:2.1.1.45)
rifcsphigho2_02_scaffold_4209_4
R_RIF_OD1_08_38_39, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

3219..3710
DNA (492bp) protein (164aa)
dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_08_38_39_curated
folA; dihydrofolate reductase (EC:1.5.1.3)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000371E8C2
rifcsphigho2_02_scaffold_4209_5

Not on your lists

3845..4084
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=uncultured microorganism RepID=F8UI40_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KHO51397.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein
rifcsphigho2_02_scaffold_4209_6

Not on your lists

4250..5065
DNA (816bp) protein (272aa)
Putative cyclic pyranopterin monophosphate synthase {ECO:0000313|EMBL:CEG12739.1}; EC=4.1.99.18 {ECO:0000313|EMBL:CEG12739.1};; TaxID=717931 species="unclassified sequences; metagenomes; ecological me
Probable cyclic pyranopterin monophosphate synthase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWI1_METFV
gtp cyclohydrolase subunit moaa
rifcsphigho2_02_scaffold_4209_7
Aciduliprofundum boonei, Aciduliprofundum, Euryarchaeota, Archaea

Not on your lists

5068..5496
DNA (429bp) protein (143aa)
Probable cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IAX1_ACIB4
Probable cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=439481 spec
molybdenum cofactor biosynthesis protein C
rifcsphigho2_02_scaffold_4209_8
Bacillus smithii, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5498..6013
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Bacillus endophyticus RepID=UPI0002EB1735
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=665952 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus smithii 7_3_47FAA
molybdenum cofactor synthesis domain-containing protein
rifcsphigho2_02_scaffold_4209_9
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

6015..7229
DNA (1215bp) protein (405aa)
Molybdenum cofactor synthesis domain protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GXR7_METFV rbh
molybdenum cofactor synthesis domain-containing protein
Molybdenum cofactor synthesis domain protein {ECO:0000313|EMBL:ADP77099.1}; TaxID=523846 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methanothermus.;" sour
rifcsphigho2_02_scaffold_4209_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7229..7669
DNA (441bp) protein (147aa)
MOSC domain protein n=1 Tax=Clostridium botulinum (strain Loch Maree / Type A3) RepID=B1KU18_CLOBM
MOSC domain-containing protein
MOSC domain protein {ECO:0000313|EMBL:ACA54953.1}; TaxID=498214 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Loch Mare
rifcsphigho2_02_scaffold_4209_11
unknown

Not on your lists

7770..8120
DNA (351bp) protein (117aa)

This feature has no annotations

rifcsphigho2_02_scaffold_4209_12
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

8527..8973
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037AA1BA
Putative uncharacterized protein Tax=AR11
hypothetical protein
rifcsphigho2_02_scaffold_4209_13
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9010..9768)
DNA (759bp) protein (253aa)
Protein FdhD homolog n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MLW4_ALKOO
formate dehydrogenase accessory protein
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187, ECO:0000256|SAAS:SAAS00093832}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Al
rifcsphigho2_02_scaffold_4209_14
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

comp(9765..10559)
DNA (795bp) protein (265aa)
molybdenum cofactor guanylyltransferase Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
Probable molybdenum cofactor guanylyltransferase id=1984787 bin=GWB2_CP_45_9 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
molybdopterin-guanine dinucleotide biosynthesis protein A-like protein
rifcsphigho2_02_scaffold_4209_15

Not on your lists

comp(10561..12594)
DNA (2034bp) protein (678aa)
chy:CHY_0733 fdhA; NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing (EC:1.2.1.2); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] id=1242954 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi rbh
Uncharacterized protein {ECO:0000313|EMBL:KKO11471.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
formate dehydrogenase subunit alpha
rifcsphigho2_02_scaffold_4209_16

Not on your lists

comp(12670..13917)
DNA (1248bp) protein (416aa)
glutamate dehydrogenase; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] id=5049174 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
glutamate dehydrogenase
rifcsphigho2_02_scaffold_4209_17
R_OD1_Yanofskybacteria_38_22b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(13946..14272)
DNA (327bp) protein (109aa)
Glutaredoxin-like protein, YruB-family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=D2Z6P9_9BACT
Glutaredoxin-like protein, YruB-family Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_38_22b_curated
YruB family glutaredoxin-like protein
rifcsphigho2_02_scaffold_4209_18

Not on your lists

comp(14272..16068)
DNA (1797bp) protein (599aa)
sodium/hydrogen exchanger id=5043591 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Sodium/hydrogen exchanger {ECO:0000313|EMBL:KHO46567.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
sodium/hydrogen exchanger
rifcsphigho2_02_scaffold_4209_19
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

16390..17220
DNA (831bp) protein (277aa)
Endonuclease IV Tax=AR11
Endonuclease IV id=5799995 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_4209_20

Not on your lists

comp(17231..18664)
DNA (1434bp) protein (478aa)
Aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A {ECO:0000313|EMBL:KHO51304.1}; EC=6.3.5.6 {ECO:0000313|EMBL:KHO51304.1};; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR
aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A (EC:6.3.5.6)
Glutamyl-tRNA(Gln) amidotransferase subunit A id=5799876 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_4209_21
RIFOXYB2_FULL_OD1_Uhrbacteria_41_18_curated, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(18661..19209)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037DBB75
major facilitator superfamily protein Tax=RIFOXYB2_FULL_OD1_Uhrbacteria_41_18_curated
Major facilitator superfamily MFS_1
rifcsphigho2_02_scaffold_4209_22
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(19213..19722)
DNA (510bp) protein (170aa)
Peptidylprolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Selenomonas sputigena (strain ATCC 35185 / DSM 20758 / VPI D19B-28) RepID=C9LTH2_SELS3
peptidyl-prolyl cis-trans isomerase B Tax=AR11
rifcsphigho2_02_scaffold_4209_23

Not on your lists

comp(19785..20075)
DNA (291bp) protein (97aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_0012
gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C (EC:6.3.5.6)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C id=5799877 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_4209_24
R_OP11_Roizmanbacteria_41_22, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

20180..20422
DNA (243bp) protein (81aa)
seg 15..27 Tax=RIFCSPLOWO2_01_FULL_OP11_Roizmanbacteria_41_22_curated
seg 15..27 id=72185 bin=ACD50 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
Displaying 24 items

View Taxonomy