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rifcsphigho2_02_scaffold_5284

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
rifcsphigho2_02_scaffold_5284_1
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(1..831)
-----------------
DNA (831bp)
protein (277aa)
alpha/beta hydrolase fold protein id=14430970 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
dipeptidyl aminopeptidases/acylaminoacyl-peptidase
rifcsphigho2_02_scaffold_5284_2
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

912..1982
-----------------
DNA (1071bp)
protein (357aa)
Putative leucyl aminopeptidase n=1 Tax=Treponema succinifaciens (strain ATCC 33096 / DSM 2489 / 6091) RepID=F2NU81_TRES6
leucyl aminopeptidase
rifcsphigho2_02_scaffold_5284_3
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

2044..3201
-----------------
DNA (1158bp)
protein (386aa)
radical SAM domain-containing protein; K07129 id=5050703 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
rifcsphigho2_02_scaffold_5284_4

Not on your lists

3301..3645
-----------------
DNA (345bp)
protein (115aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K04794 peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] id=5043642 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Peptidyl-tRNA hydrolase
rifcsphigho2_02_scaffold_5284_5
unknown

Not on your lists

3712..3855
-----------------
DNA (144bp)
protein (48aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5284_trna_1
unknown

Not on your lists

3739..3826
-----------------
DNA (88bp)
transferRNA
rifcsphigho2_02_scaffold_5284_6
RBG_13_Euryarchaeota_31_8_curated, Euryarchaeota, Archaea

Not on your lists

comp(3953..4609)
-----------------
DNA (657bp)
protein (219aa)
Putative uncharacterized protein n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R555_SPISS
hypothetical protein
rifcsphigho2_02_scaffold_5284_7
unknown

Not on your lists

4697..4816
-----------------
DNA (120bp)
protein (40aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5284_8
BJP_IG2158_OD1_28_51, Parcubacteria, Bacteria

Not on your lists

4863..5606
-----------------
DNA (744bp)
protein (248aa)
Dihydrodipicolinate reductase id=3523039 bin=GWC1_Spirochaetes_27_15 species=Sphaerochaeta globosa genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
Dihydrodipicolinate reductase
rifcsphigho2_02_scaffold_5284_9
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

5859..6737
-----------------
DNA (879bp)
protein (293aa)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C848_DESTA
dihydrodipicolinate synthase
rifcsphigho2_02_scaffold_5284_10
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6805..8067
-----------------
DNA (1263bp)
protein (421aa)
diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PVS6_METMA
rifcsphigho2_02_scaffold_5284_11
BJP_IG2103_ACD39_50_23, ACD39, Bacteria

Not on your lists

8224..9438
-----------------
DNA (1215bp)
protein (405aa)
LL-diaminopimelate aminotransferase id=3448624 bin=GWC2_ACD39_50_8 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_ACD39_50_8 organism_group=ACD39
aspC; L,L-diaminopimelate aminotransferase
rifcsphigho2_02_scaffold_5284_12
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

9435..10757
-----------------
DNA (1323bp)
protein (441aa)
hypothetical protein n=2 Tax=unclassified Crenarchaeota RepID=UPI0003791EAE
aspartate kinase
rifcsphigho2_02_scaffold_5284_13
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10957..11976
-----------------
DNA (1020bp)
protein (340aa)
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
UPI0003D1C11D related cluster n=1 Tax=unknown RepID=UPI0003D1C11D rbh
rifcsphigho2_02_scaffold_5284_14
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

12148..13596
-----------------
DNA (1449bp)
protein (483aa)
lysyl-tRNA synthetase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B431B0
lysyl-tRNA synthetase
rifcsphigho2_02_scaffold_5284_15
R_OD1_Kaiserbacteria_54_13, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

13653..14786
-----------------
DNA (1134bp)
protein (378aa)
Homoserine dehydrogenase n=1 Tax=Zea mays RepID=B4G038_MAIZE
aspartate kinase
rifcsphigho2_02_scaffold_5284_16
Bacillus bataviensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14819..16198
-----------------
DNA (1380bp)
protein (460aa)
lysC; aspartokinase LysC (EC:2.7.2.4)
Aspartokinase n=1 Tax=Bacillus bataviensis LMG 21833 RepID=K6C3P9_9BACI rbh
rifcsphigho2_02_scaffold_5284_17
R_OP11_Roizmanbacteria_41_22, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(16298..16690)
-----------------
DNA (393bp)
protein (131aa)
rifcsphigho2_02_scaffold_5284_18
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16707..18065)
-----------------
DNA (1359bp)
protein (453aa)
homoserine dehydrogenase (EC:1.1.1.3)
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI00037C1417
rifcsphigho2_02_scaffold_5284_19

Not on your lists

18124..19764
-----------------
DNA (1641bp)
protein (547aa)
lysyl-tRNA synthetase (EC:6.1.1.6); K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6] id=5043637 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
lysyl-tRNA synthetase, class I (EC:6.1.1.6)
rifcsphigho2_02_scaffold_5284_20
unknown

Not on your lists

19907..20500
-----------------
DNA (594bp)
protein (198aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5284_21
unknown

Not on your lists

20585..22003
-----------------
DNA (1419bp)
protein (473aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5284_22
GWA2_Desulfovibrionales_65_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22118..23851
-----------------
DNA (1734bp)
protein (578aa)
rifcsphigho2_02_scaffold_5284_23
Pyrococcus sp. ST04, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(23858..24358)
-----------------
DNA (501bp)
protein (167aa)
Leucine-responsive regulatory protein n=1 Tax=Pyrococcus sp. ST04 RepID=I3RCP0_9EURY
leucine-responsive regulatory protein
rifcsphigho2_02_scaffold_5284_24
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

24800..31282
-----------------
DNA (6483bp)
protein (2161aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W057_UNCMA
putative proteinase
rifcsphigho2_02_scaffold_5284_25
unknown

Not on your lists

31279..31485
-----------------
DNA (207bp)
protein (69aa)

This feature has no annotations

Displaying 26 items

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