ggKbase home page

rifcsphigho2_02_scaffold_5438

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
rifcsphigho2_02_scaffold_5438_1
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(425..874)
-----------------
DNA (450bp)
protein (150aa)
hypothetical protein
Putative uncharacterized protein id=5050194 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_5438_2
CG_Omnitr_04, Omnitrophica, Bacteria

Not on your lists

comp(920..1360)
-----------------
DNA (441bp)
protein (147aa)
hypothetical protein
Putative uncharacterized protein id=5050194 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_5438_3
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(1535..2848)
-----------------
DNA (1314bp)
protein (438aa)
Type II secretion system protein F GspF2 n=1 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AA00_9EURY id=5102969 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Type II secretion system protein F GspF2
rifcsphigho2_02_scaffold_5438_4
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2851..3666)
-----------------
DNA (816bp)
protein (272aa)
Type II secretion system protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DG92_9EURY id=5102968 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Type II secretion system protein
rifcsphigho2_02_scaffold_5438_5
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3747..4580)
-----------------
DNA (834bp)
protein (278aa)
Circadian regulator n=1 Tax=Haloarcula hispanica N601 RepID=V5TPV2_HALHI
circadian regulator
rifcsphigho2_02_scaffold_5438_6
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

4785..5882
-----------------
DNA (1098bp)
protein (366aa)
peptide chain release factor 1; K03265 peptide chain release factor subunit 1 id=5044062 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
peptide chain release factor 1
rifcsphigho2_02_scaffold_5438_7
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

6010..6666
-----------------
DNA (657bp)
protein (219aa)
hypothetical protein id=5045855 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_5438_8
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists

6755..6970
-----------------
DNA (216bp)
protein (72aa)
transcription factor CBF/NF-Y/histone domain-containing protein id=5041813 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
archaeal histone
rifcsphigho2_02_scaffold_5438_9

Not on your lists


7033..7425
-----------------
DNA (393bp)
protein (131aa)
ASCG--Translation--initiation--factor--5A
Translation initiation factor 5A id=5800376 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Translation initiation factor 5A
rifcsphigho2_02_scaffold_5438_10
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

7713..9014
-----------------
DNA (1302bp)
protein (434aa)
Peptidase M50 n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFS7_9EURY id=5103023 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Peptidase M50
rifcsphigho2_02_scaffold_5438_11
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

9052..9585
-----------------
DNA (534bp)
protein (178aa)
rifcsphigho2_02_scaffold_5438_12
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(9650..9967)
-----------------
DNA (318bp)
protein (106aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VWU3_9EURY
rifcsphigho2_02_scaffold_5438_13
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

10065..11246
-----------------
DNA (1182bp)
protein (394aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TP66_METAC rbh
hypothetical protein rbh
rifcsphigho2_02_scaffold_5438_14
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11249..11773
-----------------
DNA (525bp)
protein (175aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TP65_METAC
hypothetical protein
rifcsphigho2_02_scaffold_5438_15
AR6, Pacearchaeaota, DPANN, Archaea

Not on your lists

11825..12373
-----------------
DNA (549bp)
protein (183aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037B00D1
hypothetical protein
rifcsphigho2_02_scaffold_5438_16
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

12414..13526
-----------------
DNA (1113bp)
protein (371aa)
Putative RNA methylase id=5800383 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
RNA methylase
rifcsphigho2_02_scaffold_5438_17
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

comp(13530..15935)
-----------------
DNA (2406bp)
protein (802aa)
phosphoenolpyruvate synthase (EC:2.7.9.2)
Phosphoenolpyruvate synthase n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LRB5_SYNAS rbh
rifcsphigho2_02_scaffold_5438_18
unknown

Not on your lists

comp(16014..16202)
-----------------
DNA (189bp)
protein (63aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5438_19
unknown

Not on your lists

comp(16209..17018)
-----------------
DNA (810bp)
protein (270aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5438_20
Bacteriovorax sp. Seq25_V, Bacteriovorax, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17067..17825)
-----------------
DNA (759bp)
protein (253aa)
Prephenate dehydratase n=1 Tax=Bacteriovorax sp. Seq25_V RepID=T0R5I9_9DELT
bifunctional chorismate mutase/prephenate dehydrogenase
Displaying 20 items

View Taxonomy