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rifcsphigho2_02_scaffold_8411

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_8411_1
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

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3..251
DNA (249bp) protein (83aa)
bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deamina
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI000378A3A1
riboflavin biosynthesis protein RibD
rifcsphigho2_02_scaffold_8411_2
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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525..1211
DNA (687bp) protein (229aa)
bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein (EC:3.5.4.25)
Riboflavin biosynthesis protein RibBA n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=RIBBA_SYNWW
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophil
rifcsphigho2_02_scaffold_8411_3
unknown

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1463..1840
DNA (378bp) protein (126aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8411_4
unknown

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1841..2611
DNA (771bp) protein (257aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8411_5
AR11, Woesearchaeaota, DPANN, Archaea

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2655..4319
DNA (1665bp) protein (555aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] id=5050148 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Arginyl-tRNA synthetase Tax=AR11
Arginyl-tRNA synthetase
rifcsphigho2_02_scaffold_8411_6

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comp(4517..5299)
DNA (783bp) protein (261aa)
tRNA (adenine-N(1)-)-methyltransferase (EC:2.1.1.36); K07442 tRNA (adenine57-N1/adenine58-N1)-methyltransferase [EC:2.1.1.219 2.1.1.220] id=5046750 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
tRNA (Adenine57-N1/adenine58-N1)-methyltransferase {ECO:0000313|EMBL:KHO45938.1}; EC=2.1.1.219 {ECO:0000313|EMBL:KHO45938.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
tRNA (adenine-N(1)-)-methyltransferase (EC:2.1.1.36)
rifcsphigho2_02_scaffold_8411_7
unknown

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5629..6144
DNA (516bp) protein (172aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8411_8
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(6141..7166)
DNA (1026bp) protein (342aa)
hypothetical protein
Phosphoesterase, DHHA1 Tax=CG_Woesearch_02
Phosphoesterase, DHHA1 id=5044037 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_8411_9
unknown

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7261..7593
DNA (333bp) protein (111aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8411_10
unknown

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7583..7771
DNA (189bp) protein (63aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8411_11
CG_Woesearch_02, Woesearchaeota, Archaea

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7822..9024
DNA (1203bp) protein (401aa)
hypothetical protein Tax=CG_Woesearch_02
Uncharacterized protein id=5799713 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_8411_12
AR15, Woesearchaeaota, DPANN, Archaea

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comp(9028..9681)
DNA (654bp) protein (218aa)
UPI000038E2D0 related cluster id=5800598 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
UPI000038E2D0 related cluster Tax=AR15
rifcsphigho2_02_scaffold_8411_13
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

9787..11409
DNA (1623bp) protein (541aa)
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000
2-isopropylmalate synthase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RG97_MOOTA
rifcsphigho2_02_scaffold_8411_14
CG_Woesearch_02, Woesearchaeota, Archaea

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11539..12984
DNA (1446bp) protein (482aa)
Putative uncharacterized protein Tax=CG_Woesearch_02
Putative uncharacterized protein id=5043950 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_8411_15
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

13329..15515
DNA (2187bp) protein (729aa)
AP endonuclease family enzyme
Xylose isomerase-like, TIM barrel domain id=5043952 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Xylose isomerase-like, TIM barrel domain Tax=AR4
rifcsphigho2_02_scaffold_8411_16
unknown

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comp(15577..16305)
DNA (729bp) protein (243aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8411_17
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(16472..16990)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037D880D
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
HEPN domain-containing protein
rifcsphigho2_02_scaffold_8411_18
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(16983..17573)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036745B5
DNA polymerase beta domain-containing protein region Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_02_scaffold_8411_19
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

17923..19380
DNA (1458bp) protein (486aa)
secretory protein kinase; K07332 archaeal flagellar protein FlaI Tax=AR11
type II/IV secretion system ATPase; K07332 archaeal flagellar protein FlaI id=5045808 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Secretory protein kinase
rifcsphigho2_02_scaffold_8411_20

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19383..20207
DNA (825bp) protein (275aa)
Type II secretion system protein {ECO:0000313|EMBL:KHO50885.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein; K07333 archaeal flagellar protein FlaJ id=5044200 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Type II secretion system protein
rifcsphigho2_02_scaffold_8411_21
AR11, Woesearchaeaota, DPANN, Archaea

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20244..21272
DNA (1029bp) protein (343aa)
hypothetical protein Tax=AR11
gspF2; type II secretion system protein F GspF2 id=5045810 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Type II secretion system protein F GspF2
rifcsphigho2_02_scaffold_8411_22

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comp(21423..21896)
DNA (474bp) protein (158aa)
Demethylmenaquinone methyltransferase id=5799543 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:AJF60874.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
hypothetical protein
rifcsphigho2_02_scaffold_8411_23

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comp(22050..22376)
DNA (327bp) protein (109aa)
hypothetical protein id=5048668 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45331.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_02_scaffold_8411_24

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22447..22713
DNA (267bp) protein (89aa)
hypothetical protein id=5048669 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45332.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_02_scaffold_8411_25
unknown

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22715..23077
DNA (363bp) protein (121aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8411_26
AR11, Woesearchaeaota, DPANN, Archaea

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23226..23807
DNA (582bp) protein (194aa)
hypothetical protein Tax=AR11
Glutamate--tRNA ligase id=4560501 bin=GWF2_Planctomycetes_50_10 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
rifcsphigho2_02_scaffold_8411_27

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23952..24443
DNA (492bp) protein (164aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO52764.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
id=5103248 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_02_scaffold_8411_28
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

24516..25232
DNA (717bp) protein (239aa)
Suspect SCG annotation. See neighboring gene [rifcsphigho2_02_scaffold_8411_29].
Methionyl-tRNA synthetase, class Ia Tax=AR11
Methionine--tRNA ligase id=5799554 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
methionyl-tRNA synthetase
rifcsphigho2_02_scaffold_8411_29
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists


25259..26518
DNA (1260bp) protein (420aa)
Methionyl-tRNA synthetase, class Ia Tax=AR11
Methionine--tRNA ligase id=5799554 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Methionyl-tRNA synthetase
rifcsphigho2_02_scaffold_8411_30
CG_Pacearch_03, Pacearchaeota, Archaea

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26607..27488
DNA (882bp) protein (294aa)
hypothetical protein, partial n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003804E87
MscS Mechanosensitive ion channel Tax=CG_Pacearch_03
MscS mechanosensitive ion channel
Displaying 30 items

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