ggKbase home page

rifcsphigho2_02_scaffold_21998

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_21998_1
Parcubacteria bacterium GW2011_GWA2_46_9, Parcubacteria, Bacteria

Not on your lists

2..913
DNA (912bp) protein (304aa)
Putative tRNA pseudouridine synthase B {ECO:0000313|EMBL:KKU47144.1}; Flags: Fragment;; TaxID=1618838 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_46_9.;"
Probable tRNA pseudouridine synthase B id=5799607 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
putative tRNA pseudouridine synthase B
rifcsphigho2_02_scaffold_21998_2
unknown

Not on your lists

1009..1668
DNA (660bp) protein (220aa)

This feature has no annotations

rifcsphigho2_02_scaffold_21998_3
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

1725..2315
DNA (591bp) protein (197aa)
hypothetical protein; K05595 multiple antibiotic resistance protein id=5096758 bin=PER_GWF2_39_17 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=PER_GWF2_39_17 organism_group=PER (Peregrinibacteria)
Uncharacterized protein {ECO:0000313|EMBL:KKR09096.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_17.;"
multiple antibiotic resistance (MarC)-like proteins
rifcsphigho2_02_scaffold_21998_4
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

2502..3569
DNA (1068bp) protein (356aa)
cell division protein FtsZ; K03531 cell division protein FtsZ Tax=CG_Woesearch_01
cell division protein FtsZ; K03531 cell division protein FtsZ id=5044675 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Cell division protein FtsZ
rifcsphigho2_02_scaffold_21998_5

Not on your lists

3651..6260
DNA (2610bp) protein (870aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037BAE18
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO49135.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
rifcsphigho2_02_scaffold_21998_6
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(6271..6555)
DNA (285bp) protein (95aa)
hypothetical protein; K09728 hypothetical protein id=5045726 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein; K09728 hypothetical protein Tax=AR18
hypothetical protein
rifcsphigho2_02_scaffold_21998_7
unknown

Not on your lists

comp(6562..7020)
DNA (459bp) protein (153aa)

This feature has no annotations

rifcsphigho2_02_scaffold_21998_8
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(7030..7230)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BIX2_9BACT
Succinyl-CoA synthetase (Alpha subunit) Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_02_scaffold_21998_9
GWA2_OP11_46_7, Microgenomates, Bacteria

Not on your lists

comp(7280..8071)
DNA (792bp) protein (264aa)
3'-5' exoribonuclease {ECO:0000313|EMBL:KKU44649.1}; TaxID=1618502 species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWA2_46_7.;"
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 id=5046925 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribosomal RNA-processing protein RRP42
rifcsphigho2_02_scaffold_21998_10
GWA2_OP11_46_7, Microgenomates, Bacteria

Not on your lists

comp(8081..8749)
DNA (669bp) protein (223aa)
Exosome complex exonuclease Rrp41 {ECO:0000313|EMBL:KKU44650.1}; TaxID=1618502 species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWA2_46_7.;"
Rph; exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 id=5046926 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
exosome complex exonuclease Rrp41
rifcsphigho2_02_scaffold_21998_11

Not on your lists

comp(8842..9537)
DNA (696bp) protein (232aa)
rpr43; exosome RNA binding protein (EC:3.1.13.-); K03679 exosome complex component RRP4 id=5046927 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
putative exosome complex RNA-binding protein 1
rifcsphigho2_02_scaffold_21998_12
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(9550..10251)
DNA (702bp) protein (234aa)
Shwachman-Bodian-Diamond syndrome protein n=1 Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8ANR4_METOI
Predicted exosome subunit Tax=AR11
Shwachman-Bodian-Diamond syndrome protein
rifcsphigho2_02_scaffold_21998_13

Not on your lists

comp(10297..11058)
DNA (762bp) protein (254aa)
psmA; proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] id=5046929 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PsmA
Proteasome subunit alpha
rifcsphigho2_02_scaffold_21998_14
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(11195..11563)
DNA (369bp) protein (123aa)
ribonuclease P protein component 2 Tax=CG_Woesearch_02
Ribonuclease P protein component 2 id=5046930 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Displaying 14 items

View Taxonomy