ggKbase home page

rifcsphigho2_02_scaffold_8405

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
rifcsphigho2_02_scaffold_8405_1
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

80..631
-----------------
DNA (552bp)
protein (184aa)
Putative signal transduction protein with CBS domains n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GXK7_METFV
signal transduction protein with cbs domains
rifcsphigho2_02_scaffold_8405_2
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

706..2148
-----------------
DNA (1443bp)
protein (481aa)
aspartokinase 3 (EC:2.7.2.4)
hypothetical protein n=1 Tax=Bacillus massiliosenegalensis RepID=UPI0002F65A71
rifcsphigho2_02_scaffold_8405_3
unknown

Not on your lists

comp(2145..2273)
-----------------
DNA (129bp)
protein (43aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8405_4
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

2348..4273
-----------------
DNA (1926bp)
protein (642aa)
threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Thermincola potens (strain JR) RepID=D5X807_THEPJ
rifcsphigho2_02_scaffold_8405_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4275..6473)
-----------------
DNA (2199bp)
protein (733aa)
Putative copper amine oxidase-like protein id=5800765 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
copper amine oxidase-like protein
rifcsphigho2_02_scaffold_8405_6
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(6561..6971)
-----------------
DNA (411bp)
protein (137aa)
rifcsphigho2_02_scaffold_8405_7

Not on your lists

comp(6973..7578)
-----------------
DNA (606bp)
protein (202aa)
ArsR family transcriptional regulator id=5050187 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ArsR family transcriptional regulator
rifcsphigho2_02_scaffold_8405_8
RIFOXYB2_FULL_Elusimicrobia_49_7_curated, Elusimicrobia, Bacteria

Not on your lists

comp(7644..9992)
-----------------
DNA (2349bp)
protein (783aa)
rifcsphigho2_02_scaffold_8405_9

Not on your lists

comp(10061..11029)
-----------------
DNA (969bp)
protein (323aa)
AsnC/Lrp family transcriptional regulator id=5049211 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
rifcsphigho2_02_scaffold_8405_10
R_RIF_OD1_06_34_10, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

11245..12096
-----------------
DNA (852bp)
protein (284aa)
Pyridoxal-5'-phosphate-dependent protein beta subunit n=1 Tax=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) RepID=A3DGP2_CLOTH
pyridoxal-5'-phosphate-dependent enzyme subunit beta
rifcsphigho2_02_scaffold_8405_11
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


12153..13502
-----------------
DNA (1350bp)
protein (450aa)
ASCG--Signal--recognition--particle--54--kDa--protein
signal recognition particle protein Srp54; K03106 signal recognition particle subunit SRP54 id=5050706 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
SRP54-type protein, GTPase protein
rifcsphigho2_02_scaffold_8405_12
unknown

Not on your lists

comp(13516..13791)
-----------------
DNA (276bp)
protein (92aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8405_13
unknown

Not on your lists

comp(13827..14288)
-----------------
DNA (462bp)
protein (154aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8405_14
unknown

Not on your lists

comp(14328..15005)
-----------------
DNA (678bp)
protein (226aa)

This feature has no annotations

rifcsphigho2_02_scaffold_8405_15
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

15063..16337
-----------------
DNA (1275bp)
protein (425aa)
PHP domain protein id=5800577 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
PHP protein
Displaying 15 items

View Taxonomy