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rifcsphigho2_02_scaffold_27127

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_27127_1
unknown

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comp(1..153)
-----------------
DNA (153bp)
protein (51aa)

This feature has no annotations

rifcsphigho2_02_scaffold_27127_2

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comp(365..574)
-----------------
DNA (210bp)
protein (70aa)
Uncharacterized protein n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RG33_METP4
Uncharacterized protein {ECO:0000313|EMBL:KHO54197.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
hypothetical protein
rifcsphigho2_02_scaffold_27127_3

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1010..2479
-----------------
DNA (1470bp)
protein (490aa)
hypothetical protein; K14415 tRNA-splicing ligase RtcB [EC:6.5.1.3] id=5048716 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
tRNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_02_scaffold_27127_4
CG_Omnitr_03, Omnitrophica, Bacteria

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2490..3239
-----------------
DNA (750bp)
protein (250aa)
zinc/iron permease Tax=CG_Omnitr_03
zinc/iron permease id=5802294 bin=PER_GWA2_38_35 species=PER_GWA2_38_35 genus=PER_GWA2_38_35 taxon_order=PER_GWA2_38_35 taxon_class=PER_GWA2_38_35 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
zinc/iron permease
rifcsphigho2_02_scaffold_27127_5
AR11, Woesearchaeaota, DPANN, Archaea

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3241..3687
-----------------
DNA (447bp)
protein (149aa)
Protein archease n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYA7_METFV id=5103007 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Putative uncharacterized protein Tax=AR11
Protein archease
rifcsphigho2_02_scaffold_27127_6
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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comp(3684..4283)
-----------------
DNA (600bp)
protein (200aa)
isochorismatase hydrolase; K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Isochorismatase hydrolase id=2010413 bin=GWB2_CP_45_9 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
isochorismatase hydrolase
rifcsphigho2_02_scaffold_27127_7

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comp(4332..4988)
-----------------
DNA (657bp)
protein (219aa)
UPI000038E2D0 related cluster id=5800598 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61929.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
hypothetical protein
rifcsphigho2_02_scaffold_27127_8
AR10, Diapherotrites, DPANN, Archaea

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5086..6507
-----------------
DNA (1422bp)
protein (474aa)
anthranilate synthase component I (EC:4.1.3.27)
anthranilate synthase component I; K01657 anthranilate synthase component I [EC:4.1.3.27] id=5240918 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
anthranilate synthase component I; K01657 anthranilate synthase component I [EC:4.1.3.27] Tax=AR10
rifcsphigho2_02_scaffold_27127_9
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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6598..7173
-----------------
DNA (576bp)
protein (192aa)
anthranilate synthase / indole-3-glycerol phosphate synthase (EC:4.1.3.27)
AER446Wp; K01656 anthranilate synthase / indole-3-glycerol phosphate synthase [EC:4.1.3.27 4.1.1.48] id=5240919 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Anthranilate synthase component 2 {ECO:0000313|EMBL:KKU99859.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
rifcsphigho2_02_scaffold_27127_10
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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7170..8195
-----------------
DNA (1026bp)
protein (342aa)
Anthranilate phosphoribosyltransferase n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD09_METIK
Anthranilate phosphoribosyltransferase {ECO:0000313|EMBL:KKU99858.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
anthranilate phosphoribosyltransferase
rifcsphigho2_02_scaffold_27127_11
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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8170..8931
-----------------
DNA (762bp)
protein (254aa)
bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC:4.1.1.48); K13498 indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] id=5094731 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase {ECO:0000313|EMBL:KKU99857.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
rifcsphigho2_02_scaffold_27127_12
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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8928..9542
-----------------
DNA (615bp)
protein (205aa)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZDY0_9BACT
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000313|EMBL:KKU99856.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
phosphoribosylanthranilate isomerase
rifcsphigho2_02_scaffold_27127_13
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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9539..10717
-----------------
DNA (1179bp)
protein (393aa)
tryptophan synthase beta chain (EC:4.2.1.20)
tryptophan synthase, beta subunit; K01696 tryptophan synthase beta chain [EC:4.2.1.20] id=5240922 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tryptophan synthase beta chain {ECO:0000313|EMBL:KKU99855.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
rifcsphigho2_02_scaffold_27127_14
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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10714..11517
-----------------
DNA (804bp)
protein (268aa)
Tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TBJ3_METSL
Tryptophan synthase alpha chain {ECO:0000313|EMBL:KKU99854.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
rifcsphigho2_02_scaffold_27127_15
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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comp(11519..11998)
-----------------
DNA (480bp)
protein (160aa)
Bacterioferritin {ECO:0000313|EMBL:KKU99853.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
Bacterioferritin id=1250209 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
bacterioferritin
rifcsphigho2_02_scaffold_27127_16

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comp(12034..12513)
-----------------
DNA (480bp)
protein (160aa)
thiol-specific antioxidant protein id=18248451 bin=AR5_curated_draft species=Leptospirillum sp. Group II '5-way CG' genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Thiol-specific antioxidant protein {ECO:0000313|EMBL:KHO48454.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
alkyl hydroperoxide reductase
rifcsphigho2_02_scaffold_27127_17
AR11, Woesearchaeaota, DPANN, Archaea

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comp(12541..13113)
-----------------
DNA (573bp)
protein (191aa)
Iron-sulfur cluster assembly accessory protein n=2 Tax=Waddlia chondrophila RepID=D6YW49_WADCW id=5103548 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Putative uncharacterized protein Tax=AR11
Iron-sulfur cluster assembly accessory protein
rifcsphigho2_02_scaffold_27127_18
unknown

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13335..13490
-----------------
DNA (156bp)
protein (52aa)

This feature has no annotations

rifcsphigho2_02_scaffold_27127_19
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

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13474..15087
-----------------
DNA (1614bp)
protein (538aa)
Tax=GWA2_WOR_2_47_8_curated
rifcsphigho2_02_scaffold_27127_20
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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15074..15910
-----------------
DNA (837bp)
protein (279aa)
Uncharacterized protein AF_1947 n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=Y1947_ARCFU
Putative hemolysin
Putative hemolysin {ECO:0000313|EMBL:AIG98938.1}; TaxID=1344584 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus fulgidus DSM 87
Displaying 20 items

View Taxonomy