ggKbase home page

rifcsphigho2_02_scaffold_39135

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_39135_1
R_Nitrospirae_40_19, Nitrospirae, Bacteria

Not on your lists

3..539
-----------------
DNA (537bp)
protein (179aa)
Tax=RIFCSPHIGHO2_02_FULL_Nitrospirae_40_19_curated
rifcsphigho2_02_scaffold_39135_2
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(526..1284)
-----------------
DNA (759bp)
protein (253aa)
5'-deoxy-5'-methylthioadenosine phosphorylase Tax=RBG_13_Woesearchaeota_36_6_curated
Purine nucleoside phosphorylase id=3730989 bin=GWF2_Nitrospirae_44_13 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
5'-deoxy-5'-methylthioadenosine phosphorylase
rifcsphigho2_02_scaffold_39135_3

Not on your lists

comp(1439..2113)
-----------------
DNA (675bp)
protein (225aa)
ZPR1-related zinc finger protein {ECO:0000313|EMBL:KHO51872.1}; Flags: Fragment;; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
ZPR1-like zinc finger protein; K06874 zinc finger protein id=5049199 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ZPR1-like protein zinc finger protein
rifcsphigho2_02_scaffold_39135_4
unknown

Not on your lists

comp(2085..2264)
-----------------
DNA (180bp)
protein (60aa)

This feature has no annotations

rifcsphigho2_02_scaffold_39135_5
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2391..2822)
-----------------
DNA (432bp)
protein (144aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000377C38B
Putative uncharacterized protein Tax=AR11
hypothetical protein
rifcsphigho2_02_scaffold_39135_6
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists


3079..3369
-----------------
DNA (291bp)
protein (97aa)
50S ribosomal protein L21e; K02889 large subunit ribosomal protein L21e Tax=AR18
50S ribosomal protein L21e; K02889 large subunit ribosomal protein L21e id=5051516 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L21e
rifcsphigho2_02_scaffold_39135_7
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

3371..3718
-----------------
DNA (348bp)
protein (116aa)
hypothetical protein
RNA polymerase II, Rpb4 Tax=CG_Woesearch_02
RNA polymerase II, Rpb4 id=5799707 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_39135_8
GWD2_Desulfuromonadales_54_10, GWD2_Desulfuromonadales_54_10, GWD2_Desulfuromonadales_54_10, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3764..4657
-----------------
DNA (894bp)
protein (298aa)
id=1835647 bin=GWD2_Desulfuromonadales_54_10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
id=1835647 bin=GWD2_Desulfuromonadales_54_10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
rifcsphigho2_02_scaffold_39135_9
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

4667..5239
-----------------
DNA (573bp)
protein (191aa)
DNA-binding protein; K07572 putative nucleotide binding protein Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein; K07572 putative nucleotide binding protein id=5051518 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA-binding protein
rifcsphigho2_02_scaffold_39135_10
unknown

Not on your lists

5247..5441
-----------------
DNA (195bp)
protein (65aa)
Conserved hypothetical membrane protein, peptidase family M50 n=1 Tax=uncultured archaeon RepID=D1JE55_9ARCH id=5103755 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Conserved hypothetical membrane protein, peptidase family M50 n=1 Tax=uncultured archaeon RepID=D1JE55_9ARCH Tax=AR20
Conserved hypothetical membrane protein, peptidase family M50
Displaying 10 items

View Taxonomy