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rifcsphigho2_02_scaffold_6355

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_6355_1
R_OD1_Magasanikbacteria_47_16, Magasanikbacteria, Parcubacteria, Bacteria

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comp(3..236)
DNA (234bp) protein (78aa)
dihydroorotate dehydrogenase electron transfer subunit (EC:1.3.5.2); K02823 dihydroorotate dehydrogenase electron transfer subunit Tax=RIFCSPLOWO2_02_FULL_OD1_Magasanikbacteria_47_16_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI0003728638
rifcsphigho2_02_scaffold_6355_2
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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comp(457..1356)
DNA (900bp) protein (300aa)
dihydroorotate dehydrogenase fumarate (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule
Dihydroorotate dehydrogenase id=4162447 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
rifcsphigho2_02_scaffold_6355_3

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comp(1358..1813)
DNA (456bp) protein (152aa)
pyrI; aspartate carbamoyltransferase (EC:2.1.3.2)
Uncharacterized protein {ECO:0000313|EMBL:KKM86492.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Aspartate carbamoyltransferase regulatory chain id=4922845 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
rifcsphigho2_02_scaffold_6355_4

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comp(1810..2727)
DNA (918bp) protein (306aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1579371 species="Ar
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=planctomycete KSU-1 RepID=I3IH98_9PLAN
rifcsphigho2_02_scaffold_6355_5
unknown

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comp(2856..3239)
DNA (384bp) protein (128aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6355_6
unknown

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3360..3620
DNA (261bp) protein (87aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6355_7

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comp(3642..4106)
DNA (465bp) protein (155aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO51723.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
id=5103449 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_02_scaffold_6355_8
unknown

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comp(4214..4309)
DNA (96bp) protein (32aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6355_9
unknown

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comp(4341..4475)
DNA (135bp) protein (45aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6355_10

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4599..5054
DNA (456bp) protein (152aa)
AsnC family transcriptional regulator id=5042260 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
AsnC family transcriptional regulator {ECO:0000313|EMBL:KHO46758.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Transcriptional regulator, lrp family
rifcsphigho2_02_scaffold_6355_11
unknown

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comp(5067..5402)
DNA (336bp) protein (112aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6355_12
AR15, Woesearchaeaota, DPANN, Archaea

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comp(5403..8543)
DNA (3141bp) protein (1047aa)
Isoleucine--tRNA ligase id=5800603 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized rbh
Isoleucine--tRNA ligase Tax=AR15
isoleucyl-tRNA synthetase
rifcsphigho2_02_scaffold_6355_13
unknown

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comp(9026..10078)
DNA (1053bp) protein (351aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6355_14
unknown

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comp(10193..10792)
DNA (600bp) protein (200aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6355_15
CG_Aenigma_01, Aenigmaarchaeota, Archaea

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comp(10779..10928)
DNA (150bp) protein (50aa)
Tax=CG_Aenigma_01
rifcsphigho2_02_scaffold_6355_16
unknown

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11113..11418
DNA (306bp) protein (102aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6355_17
R_OD1_Yanofskybacteria_49_25, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(11524..12009)
DNA (486bp) protein (162aa)
dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3] Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_49_25_curated
dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Pseudoalteromonas sp. BSi20652 RepID=G7EJQ9_9GAMM
rifcsphigho2_02_scaffold_6355_18
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(12025..12291)
DNA (267bp) protein (89aa)
Putative toxin RelE4 n=1 Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=RELE4_METJA
hypothetical protein
Tax=BJP_IG2158_Thermoplasmatales_53_16
rifcsphigho2_02_scaffold_6355_19
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(12293..12526)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PU07_METMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM32246.1}; TaxID=192952 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina ma
rifcsphigho2_02_scaffold_6355_20

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comp(12697..13542)
DNA (846bp) protein (282aa)
thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45] id=5046293 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Thymidylate synthase {ECO:0000313|EMBL:KHO46094.1}; EC=2.1.1.45 {ECO:0000313|EMBL:KHO46094.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
thymidylate synthase (EC:2.1.1.45)
rifcsphigho2_02_scaffold_6355_21
unknown

Not on your lists

13687..15333
DNA (1647bp) protein (549aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6355_22
AR19, Pacearchaeaota, DPANN, Archaea

Not on your lists

comp(15349..15759)
DNA (411bp) protein (137aa)
hypothetical protein
Tax=AR19
rifcsphigho2_02_scaffold_6355_23

Not on your lists

comp(15753..16271)
DNA (519bp) protein (173aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55361.1}; TaxID=1579377 species="Archaea.;" source="archaeon GW2011_AR19.;"
hypothetical protein id=5050692 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
Displaying 23 items

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