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rifcsphigho2_02_scaffold_1138

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_1138_1
Haloarcula sinaiiensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(1..2190)
-----------------
DNA (2190bp)
protein (730aa)
Cell division control protein 21 n=1 Tax=Haloarcula sinaiiensis ATCC 33800 RepID=M0K1C8_9EURY
Cell division control protein 21 {ECO:0000313|EMBL:EMA14578.1}; TaxID=662476 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula sinaiien
mcm2; cell division control protein 21
rifcsphigho2_02_scaffold_1138_2

Not on your lists

comp(2300..2920)
-----------------
DNA (621bp)
protein (207aa)
tbpE; transcription factor; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5046314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rul
TATA-box-binding protein
rifcsphigho2_02_scaffold_1138_3
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

3033..3878
-----------------
DNA (846bp)
protein (282aa)
Probable tRNA sulfurtransferase n=1 Tax=uncultured Chloroflexi bacterium HF0200_06I16 RepID=E0XU02_9CHLR
thiamine biosynthesis/tRNA modification protein ThiI; K03151 thiamine biosynthesis protein ThiI Tax=RBG_16_Chloroflexi_68_14_curated
thiamine biosynthesis protein ThiI
rifcsphigho2_02_scaffold_1138_4
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(4025..4690)
-----------------
DNA (666bp)
protein (222aa)
Tax=AR11
rifcsphigho2_02_scaffold_1138_5

Not on your lists

comp(4713..5666)
-----------------
DNA (954bp)
protein (318aa)
PP-loop domain containing protein id=5046311 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
PP-loop protein {ECO:0000313|EMBL:KHO46112.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
ATP pyrophosphatase
rifcsphigho2_02_scaffold_1138_6

Not on your lists

comp(5659..6156)
-----------------
DNA (498bp)
protein (166aa)
Putative uncharacterized protein n=2 Tax=Chloroflexus RepID=A9WAH0_CHLAA
Uncharacterized protein {ECO:0000313|EMBL:KHO51245.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein
rifcsphigho2_02_scaffold_1138_7
unknown

Not on your lists

6335..6610
-----------------
DNA (276bp)
protein (92aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1138_8
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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6607..7731
-----------------
DNA (1125bp)
protein (375aa)
aspC; aspartate aminotransferase (EC:2.6.1.1)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI0003716520
Aspartate aminotransferase {ECO:0000313|EMBL:EMI17794.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula
rifcsphigho2_02_scaffold_1138_9
RIFOXYB2_FULL_WOR_1_48_7_curated, WOR-1, Bacteria

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comp(7688..8542)
-----------------
DNA (855bp)
protein (285aa)
Phosphate uptake regulator, PhoU n=1 Tax=Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta) RepID=B1Y8Y5_PYRNV
phosphate uptake regulator Tax=RIFOXYB2_FULL_WOR_1_48_7_curated
phosphate uptake regulator PhoU
rifcsphigho2_02_scaffold_1138_10
R_RIF_OD1_09_54_12, RIF-OD1-9, Parcubacteria, Bacteria

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8632..8934
-----------------
DNA (303bp)
protein (101aa)
id=3051185 bin=GWB1_Spirochaetes_59_5 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_09_54_12_curated
rifcsphigho2_02_scaffold_1138_11
unknown

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8934..9284
-----------------
DNA (351bp)
protein (117aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1138_12
Streptococcus mitis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9281..9832
-----------------
DNA (552bp)
protein (184aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
GTP diphosphokinase {ECO:0000313|EMBL:EGP65558.1}; EC=2.7.6.5 {ECO:0000313|EMBL:EGP65558.1};; TaxID=1008453 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;"
(P)ppGpp synthetase I, SpoT/RelA n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H0A7_CELFA
rifcsphigho2_02_scaffold_1138_13
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists

9970..11385
-----------------
DNA (1416bp)
protein (472aa)
Peptidase U62, modulator of DNA gyrase, PmbA/TldD protein-like protein (TldD/pmbA) n=1 Tax=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) RepID=C5A6J2_THEGJ
hypothetical protein; K03568 TldD protein Tax=CG_Pacearch_04
tldD; peptidase U62, modulator of DNA gyrase, PmbA/TldD protein-like protein (tldD/pmbA)
rifcsphigho2_02_scaffold_1138_14
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists

11382..12722
-----------------
DNA (1341bp)
protein (447aa)
TldE-like protein n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LIN5_THEBM
hypothetical protein; K03592 PmbA protein Tax=CG_Pacearch_04
TldE-like protein
rifcsphigho2_02_scaffold_1138_15
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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12831..13985
-----------------
DNA (1155bp)
protein (385aa)
proteasome-activating nucleotidase; K03420 proteasome regulatory subunit Tax=RBG_13_Woesearchaeota_36_6_curated
proteasome-activating nucleotidase; K03420 proteasome regulatory subunit id=5041798 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
proteasome-activating nucleotidase
rifcsphigho2_02_scaffold_1138_16
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

13989..14597
-----------------
DNA (609bp)
protein (203aa)
Tax=CG_Woesearch_01
rifcsphigho2_02_scaffold_1138_17
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

14594..15256
-----------------
DNA (663bp)
protein (221aa)
id=5047432 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
rifcsphigho2_02_scaffold_1138_18

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15256..15840
-----------------
DNA (585bp)
protein (195aa)
16S rRNA m(2)G 1207 methyltransferase (EC:2.1.1.171) id=5047433 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
16S rRNA m(2)G 1207 methyltransferase {ECO:0000313|EMBL:KHO45251.1}; EC=2.1.1.171 {ECO:0000313|EMBL:KHO45251.1};; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
ribosomal RNA small subunit methyltransferase C
rifcsphigho2_02_scaffold_1138_19
RBG_16_CPR_42_10_curated, Bacteria

Not on your lists

comp(15928..17364)
-----------------
DNA (1437bp)
protein (479aa)
Spermine synthase n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EG48_9CHLR
spermine synthase Tax=RBG_16_CPR_42_10_curated
hypothetical protein
rifcsphigho2_02_scaffold_1138_20
Methanoculleus sp. CAG:1088, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

17417..17689
-----------------
DNA (273bp)
protein (91aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit (EC:6.3.5.7 6.3.5.6 6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit C n=1 Tax=Methanoculleus sp. CAG:1088 RepID=R7PWJ5_9EURY
Glutamyl-tRNA(Gln) amidotransferase subunit C {ECO:0000313|EMBL:CDF30308.1}; TaxID=1262903 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus; en
rifcsphigho2_02_scaffold_1138_21
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

17643..19079
-----------------
DNA (1437bp)
protein (479aa)
glutamyl-tRNA(Gln) amidotransferase, A subunit; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=AR11
aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A (EC:6.3.5.6)
glutamyl-tRNA(Gln) amidotransferase, A subunit; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=5240565 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_1138_22

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19076..20440
-----------------
DNA (1365bp)
protein (455aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_0012
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B id=5799874 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
rifcsphigho2_02_scaffold_1138_23
unknown

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20489..20908
-----------------
DNA (420bp)
protein (140aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1138_24
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(20905..21531)
-----------------
DNA (627bp)
protein (209aa)
rnhB; ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=CG_Woesearch_02
Ribonuclease HII n=1 Tax=nanoarchaeote Nst1 RepID=R1FUF1_9ARCH
ribonuclease HII
rifcsphigho2_02_scaffold_1138_25
unknown

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comp(21566..23428)
-----------------
DNA (1863bp)
protein (621aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1138_26
unknown

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comp(23522..23881)
-----------------
DNA (360bp)
protein (120aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1138_trna_1
unknown

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comp(23886..23960)
-----------------
DNA (75bp)
transferRNA
rifcsphigho2_02_scaffold_1138_27
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

24158..27643
-----------------
DNA (3486bp)
protein (1162aa)
chromosome segregation ATPase; K03529 chromosome segregation protein Tax=CG_Woesearch_01
Chromosome partition protein Smc id=5800619 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
chromosome segregation protein SMC
rifcsphigho2_02_scaffold_1138_28
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(27624..28784)
-----------------
DNA (1161bp)
protein (387aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W6H5_UNCMA
fibronectin-binding protein Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein
rifcsphigho2_02_scaffold_1138_29
Clostridium sp. CAG:798, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28895..29530
-----------------
DNA (636bp)
protein (212aa)
Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Clostridium sp. CAG:798 RepID=R6XH79_9CLOT
Response regulator receiver modulated metal dependent phosphohydrolase {ECO:0000313|EMBL:CDD15686.1}; TaxID=1262841 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
metal dependent phosphohydrolase
Displaying items 1-30 of 44 in total

View Taxonomy