ggKbase home page

rifcsphigho2_02_scaffold_1259

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_1259_1
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

2..106
-----------------
DNA (105bp)
protein (35aa)
DNA repair helicase rad3 Tax=AR5
rifcsphigho2_02_scaffold_1259_2
RIFOXYB1_FULL_RIF_OD1_07_40_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(538..933)
-----------------
DNA (396bp)
protein (132aa)
MutT/nudix family protein Tax=RIFOXYB1_FULL_RIF_OD1_07_40_15_curated
Putative uncharacterized protein id=3066453 bin=GWF2_Lentisphaerae_38_69 species=Flavobacterium frigoris genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
MutT/nudix family protein
rifcsphigho2_02_scaffold_1259_3

Not on your lists

comp(948..1316)
-----------------
DNA (369bp)
protein (123aa)
PIN protein
PIN domain-containing protein id=5241434 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
PIN protein {ECO:0000313|EMBL:AJF60425.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_1259_4

Not on your lists

comp(1313..1522)
-----------------
DNA (210bp)
protein (70aa)
hypothetical protein
AbrB/MazE/MraZ-like id=5241435 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF60426.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_02_scaffold_1259_5
unknown

Not on your lists

1639..2112
-----------------
DNA (474bp)
protein (158aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1259_6

Not on your lists

2263..2658
-----------------
DNA (396bp)
protein (132aa)
Probable thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1579367 species="Archaea.;" source="a
Probable thymidylate kinase id=4922380 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
thymidylate kinase
rifcsphigho2_02_scaffold_1259_7
unknown

Not on your lists

2687..2956
-----------------
DNA (270bp)
protein (90aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1259_8
Thermococcus onnurineus, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(3020..4843)
-----------------
DNA (1824bp)
protein (608aa)
Predicted fibronectin-binding protein n=1 Tax=Thermococcus onnurineus (strain NA1) RepID=B6YSV0_THEON
fibronectin-binding protein
Predicted fibronectin-binding protein {ECO:0000313|EMBL:ACJ15637.1}; TaxID=523850 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus on
rifcsphigho2_02_scaffold_1259_9
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

comp(4860..5333)
-----------------
DNA (474bp)
protein (158aa)
chromosome segregation and condensation protein ScpB; K06024 segregation and condensation protein B id=18247994 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
chromosome segregation and condensation protein ScpB; K06024 segregation and condensation protein B Tax=AR5
putative transcriptional regulator
rifcsphigho2_02_scaffold_1259_10
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

comp(5330..6007)
-----------------
DNA (678bp)
protein (226aa)
condensin subunit ScpA; K05896 segregation and condensation protein A id=18247995 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
condensin subunit ScpA; K05896 segregation and condensation protein A Tax=AR5
condensin subunit ScpA
rifcsphigho2_02_scaffold_1259_11

Not on your lists

comp(6004..8433)
-----------------
DNA (2430bp)
protein (810aa)
SMC domain-containing protein; K03529 chromosome segregation protein id=5042049 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Chromosome segregation protein {ECO:0000313|EMBL:KHO48000.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
SMC domain-containing protein
rifcsphigho2_02_scaffold_1259_12
unknown

Not on your lists

comp(8420..8566)
-----------------
DNA (147bp)
protein (49aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1259_13

Not on your lists

comp(8618..9319)
-----------------
DNA (702bp)
protein (234aa)
DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (EC:3.2.2.- 4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] id=5048737 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1579365 species=
endonuclease III (EC:4.2.99.18)
rifcsphigho2_02_scaffold_1259_14
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

9371..9952
-----------------
DNA (582bp)
protein (194aa)
O-sialoglycoprotein endopeptidase/protein kinase (EC:3.4.24.57); K15904 bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein [EC:2.7.11.1] Tax=AR5
Mn2+dependent serine/threonine protein kinase id=4922345 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Mn2+-dependent serine/threonine protein kinase
rifcsphigho2_02_scaffold_1259_15

Not on your lists


9963..10400
-----------------
DNA (438bp)
protein (146aa)
30S ribosomal protein S15/S13e id=4922344 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Small subunit ribosomal protein S15 {ECO:0000313|EMBL:KHO48007.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
rps15p; 30S ribosomal protein S15
rifcsphigho2_02_scaffold_1259_16
Parcubacteria bacterium GW2011_GWA1_42_7, Parcubacteria, Bacteria

Not on your lists

10445..11119
-----------------
DNA (675bp)
protein (225aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS69085.1}; TaxID=1618785 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_42_7.;"
putative DNA alkylation repair enzyme
Putative uncharacterized protein id=4922705 bin=GWA2_TM6_36_9 species=GWA2_TM6_36_9 genus=GWA2_TM6_36_9 taxon_order=GWA2_TM6_36_9 taxon_class=GWA2_TM6_36_9 phylum=TM6 tax=GWA2_TM6_36_9 organism_group=TM6
rifcsphigho2_02_scaffold_1259_17

Not on your lists

comp(11386..11598)
-----------------
DNA (213bp)
protein (71aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1XN94_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD26701.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
rifcsphigho2_02_scaffold_1259_18
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

12119..12364
-----------------
DNA (246bp)
protein (82aa)
hypothetical protein Tax=CG_Aenigma_01
rifcsphigho2_02_scaffold_1259_19
R_OD1_Nomurabacteria_39_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

12348..12752
-----------------
DNA (405bp)
protein (135aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036BAF5F
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_39_10_curated
rifcsphigho2_02_scaffold_1259_20
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

12823..13077
-----------------
DNA (255bp)
protein (85aa)
hypothetical protein Tax=CG_Woesearch_01
id=5045948 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_1259_21

Not on your lists

13101..14459
-----------------
DNA (1359bp)
protein (453aa)
Putative uncharacterized protein id=4922343 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Uncharacterized protein {ECO:0000313|EMBL:KHO48008.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
hypothetical protein
rifcsphigho2_02_scaffold_1259_22
unknown

Not on your lists

14528..14902
-----------------
DNA (375bp)
protein (125aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1259_23
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

14934..15587
-----------------
DNA (654bp)
protein (218aa)
Putative uncharacterized protein id=4922341 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Uncharacterized protein (Fragment) Tax=AR5
rifcsphigho2_02_scaffold_1259_24
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

15584..15865
-----------------
DNA (282bp)
protein (94aa)
50S ribosomal protein L44e; K02929 large subunit ribosomal protein L44e id=18248008 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
50S ribosomal protein L44e; K02929 large subunit ribosomal protein L44e Tax=AR5
50S ribosomal protein L44
rifcsphigho2_02_scaffold_1259_25
unknown

Not on your lists

15866..16522
-----------------
DNA (657bp)
protein (219aa)
Putative membrane protein id=18248009 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
rifcsphigho2_02_scaffold_1259_26
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

16519..17454
-----------------
DNA (936bp)
protein (312aa)
rRNA pseudouridine synthase; K11131 H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] id=5042061 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
rRNA pseudouridine synthase; K11131 H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] Tax=AR5
rRNA pseudouridine synthase
rifcsphigho2_02_scaffold_1259_27

Not on your lists

17562..17729
-----------------
DNA (168bp)
protein (56aa)
Putative uncharacterized protein id=4922334 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Uncharacterized protein {ECO:0000313|EMBL:KHO48016.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
hypothetical protein
rifcsphigho2_02_scaffold_1259_28
unknown

Not on your lists

17759..18589
-----------------
DNA (831bp)
protein (277aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1259_trna_1
unknown

Not on your lists

18700..18812
-----------------
DNA (113bp)
transferRNA
rifcsphigho2_02_scaffold_1259_29
unknown

Not on your lists

18853..19125
-----------------
DNA (273bp)
protein (91aa)

This feature has no annotations

Displaying items 1-30 of 79 in total

View Taxonomy