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rifcsphigho2_02_scaffold_5146

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_5146_1

Not on your lists

comp(2..598)
-----------------
DNA (597bp)
protein (199aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Peptidase M48, Ste24p precursor
Protease HtpX homolog id=5799559 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_5146_2

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775..1272
-----------------
DNA (498bp)
protein (166aa)
Putative uncharacterized protein n=1 Tax=Thermococcus onnurineus (strain NA1) RepID=B6YVC5_THEON id=5103729 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:KHO51015.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein
rifcsphigho2_02_scaffold_5146_3
unknown

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comp(1269..2249)
-----------------
DNA (981bp)
protein (327aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5146_4
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(2323..2841)
-----------------
DNA (519bp)
protein (173aa)
PUA domain containing protein; K07575 PUA domain protein Tax=RBG_13_Woesearchaeota_36_6_curated
Universal PUA-domain-containing protein id=5800007 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
PUA domain containing protein
rifcsphigho2_02_scaffold_5146_5

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comp(2838..3236)
-----------------
DNA (399bp)
protein (133aa)
Marine sediment metagenome DNA, contig: S03H2_L07269 {ECO:0000313|EMBL:GAH39901.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Putative uncharacterized protein id=5800008 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_5146_6
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(3310..3561)
-----------------
DNA (252bp)
protein (84aa)
hypothetical protein
id=5800009 Tax=RBG_13_Woesearchaeota_36_6_curated
id=5800009 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_5146_7
CG_Pacearch_06, Pacearchaeota, Archaea

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3726..4667
-----------------
DNA (942bp)
protein (314aa)
hypothetical protein, partial n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003804E87
MscS Mechanosensitive ion channel Tax=CG_Pacearch_06
mscS-4; Small-conductance mechanosensitive channel
rifcsphigho2_02_scaffold_5146_8
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

4853..5866
-----------------
DNA (1014bp)
protein (338aa)
Asparagine synthase id=5800156 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Asparagine synthase Tax=AR15
asparagine synthase
rifcsphigho2_02_scaffold_5146_9
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(5888..7057)
-----------------
DNA (1170bp)
protein (390aa)
Small GTP-binding protein n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BBT6_METIK
small GTP-binding protein; K06944 Tax=CG_Woesearch_02
small GTP-binding protein
rifcsphigho2_02_scaffold_5146_10
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(7134..7379)
-----------------
DNA (246bp)
protein (82aa)
hypothetical protein; K09721 hypothetical protein Tax=CG_Woesearch_01
Uncharacterized protein conserved in archaea id=5799820 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_5146_11
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(7470..7814)
-----------------
DNA (345bp)
protein (115aa)
prefoldin subunit beta; K04798 prefoldin beta subunit Tax=CG_Woesearch_02
Prefoldin subunit beta id=5799819 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Prefoldin subunit beta
rifcsphigho2_02_scaffold_5146_12
unknown

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comp(7854..8081)
-----------------
DNA (228bp)
protein (76aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5146_13

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comp(8507..8848)
-----------------
DNA (342bp)
protein (114aa)
50S ribosomal protein L37Ae {ECO:0000256|HAMAP-Rule:MF_00327}; Ribosomal protein L43e {ECO:0000256|HAMAP-Rule:MF_00327}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
rpl37ae; 50S ribosomal protein L37; K02921 large subunit ribosomal protein L37Ae id=5044064 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rpl37ae; 50S ribosomal protein L37Ae
rifcsphigho2_02_scaffold_5146_trna_1
unknown

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comp(9074..9173)
-----------------
DNA (100bp)
transferRNA
rifcsphigho2_02_scaffold_5146_14
GWB1_OP11_44_6, Collierbacteria, Microgenomates, Bacteria

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comp(9539..10600)
-----------------
DNA (1062bp)
protein (354aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003802AE5
Glutamine--scyllo-inositol transaminase Tax=GWB1_OP11_44_6
degt/dnrj/eryc1/strs aminotransferase
rifcsphigho2_02_scaffold_5146_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(10655..11104)
-----------------
DNA (450bp)
protein (150aa)
putative acetyltransferase id=24459397 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methanocella conradii genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
putative acetyltransferase Tax=RBG_16_RIF_WS3X_71_46_curated
acetyltransferase
rifcsphigho2_02_scaffold_5146_16
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(11184..12329)
-----------------
DNA (1146bp)
protein (382aa)
Glycosyl transferase group 1 n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D2L7_METSW
group 1 glycosyl transferase
Group 1 glycosyl transferase {ECO:0000313|EMBL:EKF84909.1}; TaxID=1204725 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methano
rifcsphigho2_02_scaffold_5146_17

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comp(12397..13944)
-----------------
DNA (1548bp)
protein (516aa)
polysaccharide biosynthesis related protein id=5045302 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Polysaccharide biosynthesis related protein {ECO:0000313|EMBL:KHO54509.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
Polysaccharide biosynthesis protein
rifcsphigho2_02_scaffold_5146_18

Not on your lists

comp(13995..15101)
-----------------
DNA (1107bp)
protein (369aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746420 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN49343.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
rifcsphigho2_02_scaffold_5146_19
RBG_13_OD1_Falkowbacteria_36_9_curated, Falkowbacteria, Parcubacteria, Bacteria

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15303..15755
-----------------
DNA (453bp)
protein (151aa)
rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13); K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] Tax=RBG_13_OD1_Falkowbacteria_36_9_curated
rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3ADG0_CARHZ
rifcsphigho2_02_scaffold_5146_20
unknown

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comp(15770..16297)
-----------------
DNA (528bp)
protein (176aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5146_21
R_OP11_45_11, Microgenomates, Bacteria

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16404..17465
-----------------
DNA (1062bp)
protein (354aa)
group 1 glycosyl transferase Tax=RIFCSPHIGHO2_01_FULL_OP11_45_11_curated
Glycosyl transferase group 1 id=5016386 bin=GWA2_OP3_52_12 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein
rifcsphigho2_02_scaffold_5146_22

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comp(17707..18159)
-----------------
DNA (453bp)
protein (151aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI00037961CB
Marine sediment metagenome DNA, contig: S01H1_S08076 {ECO:0000313|EMBL:GAG04729.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
type 11 methyltransferase
rifcsphigho2_02_scaffold_5146_23
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists

comp(18226..19986)
-----------------
DNA (1761bp)
protein (587aa)
Putative carbamoyl transferase; K00612 carbamoyltransferase [EC:2.1.3.-] Tax=CG_Pacearch_04
Uncharacterized protein id=5800151 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
carbamoyl transferase
rifcsphigho2_02_scaffold_5146_24
CG_Pacearch_06, Pacearchaeota, Archaea

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comp(20009..20260)
-----------------
DNA (252bp)
protein (84aa)
Uncharacterized protein Tax=CG_Pacearch_06
Uncharacterized protein id=5800152 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_5146_25
unknown

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comp(20257..20460)
-----------------
DNA (204bp)
protein (68aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5146_26
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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20595..21335
-----------------
DNA (741bp)
protein (247aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000313|EMBL:AKB37916.1}; EC=2.7.7.24 {ECO:0000313|EMBL:AKB37916.1};; TaxID=1434118 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales;
rfbA-1; glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W7G4_UNCMA
rifcsphigho2_02_scaffold_5146_27

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comp(21386..21544)
-----------------
DNA (159bp)
protein (53aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51038.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Putative uncharacterized protein id=5800150 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_5146_28
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

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comp(21534..22679)
-----------------
DNA (1146bp)
protein (382aa)
Uncharacterized protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C5U0_DESTA
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
hypothetical protein
Displaying 29 items

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