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rifcsphigho2_02_scaffold_20053

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_20053_1
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

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comp(194..448)
-----------------
DNA (255bp)
protein (85aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E9W5_METEZ
methionine-S-sulfoxide reductase Tax=RBG_13_RIF03_48_7_curated
rifcsphigho2_02_scaffold_20053_2
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(574..726)
-----------------
DNA (153bp)
protein (51aa)
methionine sulfoxide reductase A; K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] Tax=GWC2_Deltaproteobacteria_55_46b_curated
Peptide methionine sulfoxide reductase MsrA id=2428980 bin=GWC2_Deltaproteobacteria_55_46 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
peptide methionine sulfoxide reductase
rifcsphigho2_02_scaffold_20053_3
AR10, Diapherotrites, DPANN, Archaea

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comp(822..1886)
-----------------
DNA (1065bp)
protein (355aa)
aroC; chorismate synthase (EC:4.2.3.5)
aroC; chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] id=5240929 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
aroC; chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] Tax=AR10
rifcsphigho2_02_scaffold_20053_4
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1931..2437)
-----------------
DNA (507bp)
protein (169aa)
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71] Tax=GWC2_Geobacteraceae_55_20_curated
shikimate kinase (EC:2.7.1.71)
Shikimate kinase id=4362766 bin=GWF2_Geobacter_54_21 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
rifcsphigho2_02_scaffold_20053_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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comp(2439..3041)
-----------------
DNA (603bp)
protein (201aa)
Uncharacterized protein n=1 Tax=Sulfurospirillum barnesii (strain ATCC 700032 / DSM 10660 / SES-3) RepID=I3XW08_SULBS
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
rifcsphigho2_02_scaffold_20053_6
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

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comp(3054..5066)
-----------------
DNA (2013bp)
protein (671aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YJ92_9BACT
3-phosphoshikimate 1-carboxyvinyltransferase
rifcsphigho2_02_scaffold_20053_7
RLO_Planctomycetes_39_13, Planctomycetes, Bacteria

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comp(5113..6675)
-----------------
DNA (1563bp)
protein (521aa)
hypothetical protein; K13832 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25] Tax=RIFCSPLOWO2_12_FULL_Planctomycetes_39_13_curated
Uncharacterized protein id=4956657 bin=GWC2_Planctomycete_KSU_39_26 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
shikimate 5-dehydrogenase
rifcsphigho2_02_scaffold_20053_8
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6763..7878)
-----------------
DNA (1116bp)
protein (372aa)
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] id=5094059 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
3-dehydroquinate synthase (EC:4.2.3.4)
Tax=BJP_IG2069_Syntrophobacterales_46_30
rifcsphigho2_02_scaffold_20053_9
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

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comp(8055..8810)
-----------------
DNA (756bp)
protein (252aa)
aroF2; phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=RBG_13_Nitrospirae_39_12_curated
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
hypothetical protein n=1 Tax=Atribacteria bacterium JGI 0000059-I14 RepID=UPI000371D72B
Displaying 9 items

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