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rifcsphigho2_02_scaffold_7115

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_7115_1

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3..1310
-----------------
DNA (1308bp)
protein (436aa)
indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase; K13498 indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] id=5240921 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase {ECO:0000313|EMBL:AJF59912.1}; EC=4.1.1.48 {ECO:0000313|EMBL:AJF59912.1};; TaxID=1579370 species="Archaea.;" source="archaeo
rifcsphigho2_02_scaffold_7115_2
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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1311..2534
-----------------
DNA (1224bp)
protein (408aa)
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=523846 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Met
Tryptophan synthase beta chain n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GX09_METFV rbh
rifcsphigho2_02_scaffold_7115_3
BJP_IG2069_Methanobacteriales_33_27, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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2536..3351
-----------------
DNA (816bp)
protein (272aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) RepID=Q2NFE5_METST
Tax=BJP_IG2069_Methanobacteriales_33_27
rifcsphigho2_02_scaffold_7115_4
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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3417..3812
-----------------
DNA (396bp)
protein (132aa)
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Turicibacter sp. PC909 RepID=D4W680_9FIRM id=50865 bin=ACD3 species=Turicibacter sanguinis genus=Turicibacter taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=ACD3 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
hypothetical protein Tax=RBG_16_Micrarchaeota_36_9_curated
hypothetical protein
rifcsphigho2_02_scaffold_7115_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3886..4368
-----------------
DNA (483bp)
protein (161aa)
rpiB; ribose 5-phosphate isomerase B (EC:5.3.1.6)
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:AIY83624.1}; EC=5.3.1.6 {ECO:0000313|EMBL:AIY83624.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostri
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=B9DX76_CLOK1
rifcsphigho2_02_scaffold_7115_6
RIFOXYB2_FULL_Peregrinibacteria_32_7_curated, Peregrinibacteria, Bacteria

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4382..5038
-----------------
DNA (657bp)
protein (219aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] id=5093974 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
ribulose-phosphate 3-epimerase Tax=RIFOXYB2_FULL_Peregrinibacteria_32_7_curated
rifcsphigho2_02_scaffold_7115_7
GWD1_Spirochaetes_27_9_curated, Spirochaetes, Bacteria

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5093..5806
-----------------
DNA (714bp)
protein (238aa)
pdh; prephenate dehydrogenase (EC:1.3.1.12); K00210 prephenate dehydrogenase [EC:1.3.1.12] Tax=GWD1_Spirochaetes_27_9_curated
pdh; prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase id=3479385 bin=GWC1_Spirochaetes_27_15 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
rifcsphigho2_02_scaffold_7115_8
Mycobacterium aromaticivorans, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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5809..6261
-----------------
DNA (453bp)
protein (151aa)
Uncharacterized conserved protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEC6_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:KDE99283.1}; TaxID=1440774 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium aromaticivorans JS19
hypothetical protein
rifcsphigho2_02_scaffold_7115_9
GWC1_CPR2_41_48, CPR2, Bacteria

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6272..7201
-----------------
DNA (930bp)
protein (310aa)
Prephenate dehydratase (EC:4.2.1.51)
P-protein id=2366964 bin=GWD1_TM7_39_7 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWD1_TM7_39_7 organism_group=CPR2 organism_desc=Same as C1_41_48, C2_39_35, D2_39_7
P-protein {ECO:0000313|EMBL:KKS09514.1}; TaxID=1618344 species="Bacteria; candidate division CPR2.;" source="candidate division CPR2 bacterium GW2011_GWC1_41_48.;"
rifcsphigho2_02_scaffold_7115_10
unknown

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comp(7225..7914)
-----------------
DNA (690bp)
protein (230aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7115_11
Hippea maritima, Hippea, Desulfurellales, Deltaproteobacteria, Proteobacteria, Bacteria

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8011..9384
-----------------
DNA (1374bp)
protein (458aa)
Aminotransferase class I and II n=1 Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LTV7_HIPMA rbh
class I/II aminotransferase rbh
Aminotransferase class I and II {ECO:0000313|EMBL:AEA34483.1}; TaxID=760142 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfurellales; Desulfurellaceae; Hippea.;" source="Hippea maritima
rifcsphigho2_02_scaffold_7115_12
CG_Woesearch_01, Woesearchaeota, Archaea

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9496..11289
-----------------
DNA (1794bp)
protein (598aa)
Uncharacterized protein n=1 Tax=Pelosinus fermentans JBW45 RepID=I9DAY5_9FIRM
hypothetical protein Tax=CG_Woesearch_01
hypothetical protein
rifcsphigho2_02_scaffold_7115_13
CG_Woesearch_02, Woesearchaeota, Archaea

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11373..12956
-----------------
DNA (1584bp)
protein (528aa)
Phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=CG_Woesearch_02
Phenylalanine--tRNA ligase alpha subunit id=5800822 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Phenylalanine-tRNA ligase alpha subunit
rifcsphigho2_02_scaffold_7115_14
CG_CPR10_03, CG_CPR10, Bacteria

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13073..14332
-----------------
DNA (1260bp)
protein (420aa)
hypothetical protein
id=5103465 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=CG_CPR10_03
rifcsphigho2_02_scaffold_7115_15
Eremothecium gossypii, Eremothecium, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

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14391..15401
-----------------
DNA (1011bp)
protein (337aa)
FABR064Wp n=1 Tax=Ashbya gossypii (strain FDAG1) RepID=M9N0C7_ASHG1
FABR064Wp {ECO:0000313|EMBL:AEY95123.1}; TaxID=1034331 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium.;" source=
rifcsphigho2_02_scaffold_7115_16

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15459..17231
-----------------
DNA (1773bp)
protein (591aa)
phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=5042330 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00284};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284};
Phenylalanine-tRNA ligase beta subunit
rifcsphigho2_02_scaffold_7115_17
unknown

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17221..17562
-----------------
DNA (342bp)
protein (114aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7115_18

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comp(17575..18810)
-----------------
DNA (1236bp)
protein (412aa)
Aromatic amino acid aminotransferase {ECO:0000313|EMBL:KKT89054.1}; TaxID=1618877 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_45_10.;"
Aromatic amino acid aminotransferase id=3501601 bin=GWA1_ZB2_49_26 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
class I/II aminotransferase
rifcsphigho2_02_scaffold_7115_19
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(18823..21780)
-----------------
DNA (2958bp)
protein (986aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RBG_13_Woesearchaeota_36_6_curated
Leucine--tRNA ligase id=5799918 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
leuS; leucyl-tRNA synthetase
rifcsphigho2_02_scaffold_7115_20

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comp(21862..22155)
-----------------
DNA (294bp)
protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50775.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
rifcsphigho2_02_scaffold_7115_21
unknown

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comp(22165..22527)
-----------------
DNA (363bp)
protein (121aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7115_22

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comp(22529..22795)
-----------------
DNA (267bp)
protein (89aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50773.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
rifcsphigho2_02_scaffold_7115_23

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comp(22837..23142)
-----------------
DNA (306bp)
protein (102aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50773.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
transmembrane_regions id=5800267 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Displaying 23 items

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