ggKbase home page

rifcsphigho2_02_scaffold_7785

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_7785_1
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2..292)
-----------------
DNA (291bp)
protein (97aa)
purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] Tax=AR11
phosphoribosylaminoimidazole succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=uncultured bacterium RepID=K2DHJ3_9BACT
rifcsphigho2_02_scaffold_7785_2

Not on your lists

comp(389..1147)
-----------------
DNA (759bp)
protein (253aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003719623
Uncharacterized protein {ECO:0000313|EMBL:KHO45755.1}; TaxID=1579364 species="Archaea.;" source="archaeon GW2011_AR1.;"
hypothetical protein
rifcsphigho2_02_scaffold_7785_3

Not on your lists

1289..1693
-----------------
DNA (405bp)
protein (135aa)
Fur family transcriptional regulator n=1 Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B46033
Ferric uptake regulator family protein {ECO:0000313|EMBL:KHO45756.1}; TaxID=1579364 species="Archaea.;" source="archaeon GW2011_AR1.;"
rifcsphigho2_02_scaffold_7785_4

Not on your lists

comp(1722..2480)
-----------------
DNA (759bp)
protein (253aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003719623
Uncharacterized protein {ECO:0000313|EMBL:KHO45755.1}; TaxID=1579364 species="Archaea.;" source="archaeon GW2011_AR1.;"
hypothetical protein
rifcsphigho2_02_scaffold_7785_5

Not on your lists

comp(2554..3471)
-----------------
DNA (918bp)
protein (306aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929};; 5-(carboxyam
purE; putative phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21); K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] id=5045875 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21 5.4.99.18)
rifcsphigho2_02_scaffold_7785_6
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3555..4853)
-----------------
DNA (1299bp)
protein (433aa)
Response regulator receiver protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SCN7_PEDSD
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ADY53881.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source=
rifcsphigho2_02_scaffold_7785_7
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4907..5647
-----------------
DNA (741bp)
protein (247aa)
nitrogen regulation protein NR(II) n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624D02
multi-sensor signal transduction histidine kinase
Multi-sensor signal transduction histidine kinase {ECO:0000313|EMBL:ADB18937.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" sourc
rifcsphigho2_02_scaffold_7785_8
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(5673..5984)
-----------------
DNA (312bp)
protein (104aa)
Alkylhydroperoxidase AhpD core id=5799636 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Alkylhydroperoxidase AhpD core Tax=AR15
DNA-binding protein
rifcsphigho2_02_scaffold_7785_9
unknown

Not on your lists

comp(6078..6548)
-----------------
DNA (471bp)
protein (157aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7785_10

Not on your lists

comp(6553..7356)
-----------------
DNA (804bp)
protein (268aa)
phosphoribosylformylglycinamidine synthase I; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] id=5045877 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421};; Formyl
purQ; phosphoribosylformylglycinamidine synthase I (EC:6.3.5.3)
rifcsphigho2_02_scaffold_7785_11
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(7407..9842)
-----------------
DNA (2436bp)
protein (812aa)
purL; phosphoribosylformylglycinamidine synthase II; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] Tax=AR11
Phosphoribosylformylglycinamidine synthase II; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] id=5045878 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Phosphoribosylformylglycinamidine synthase II
rifcsphigho2_02_scaffold_7785_12
CG_Desulfob_01, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9945..11186)
-----------------
DNA (1242bp)
protein (414aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] Tax=CG_Desulfob_01
FolC bifunctional protein id=4010270 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
rifcsphigho2_02_scaffold_7785_13
unknown

Not on your lists

11393..11548
-----------------
DNA (156bp)
protein (52aa)

This feature has no annotations

rifcsphigho2_02_scaffold_7785_14

Not on your lists

11813..12355
-----------------
DNA (543bp)
protein (181aa)
seg id=5042267 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46765.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_02_scaffold_7785_15
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

12371..13093
-----------------
DNA (723bp)
protein (241aa)
hypothetical protein
seg Tax=RBG_13_Woesearchaeota_36_6_curated
seg id=5799865 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_7785_16
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(13537..14562)
-----------------
DNA (1026bp)
protein (342aa)
KH-domain/beta-lactamase-domain-containing protein; K07041 Tax=CG_Woesearch_02
KH-domain/beta-lactamase-domain protein id=5799852 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
KH-domain/beta-lactamase-domain protein
Displaying 16 items

View Taxonomy