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rifcsphigho2_02_scaffold_19381

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_19381_1
Methanobacterium sp. Maddingley MBC34, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(1..219)
-----------------
DNA (219bp)
protein (73aa)
50S ribosomal protein L34e n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6TYY7_9EURY
50S ribosomal protein L34e {ECO:0000256|HAMAP-Rule:MF_00349}; TaxID=1220534 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Metha
50S ribosomal protein L34e
rifcsphigho2_02_scaffold_19381_2

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comp(617..1384)
-----------------
DNA (768bp)
protein (256aa)
hypothetical protein
Putative uncharacterized protein id=5042325 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46823.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_02_scaffold_19381_3
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(1394..2785)
-----------------
DNA (1392bp)
protein (464aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=CG_Woesearch_02
SecY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5041782 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein translocase subunit SecY
rifcsphigho2_02_scaffold_19381_4

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comp(3165..3653)
-----------------
DNA (489bp)
protein (163aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=5042323 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L15P
rifcsphigho2_02_scaffold_19381_5
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(3789..4184)
-----------------
DNA (396bp)
protein (132aa)
50S ribosomal protein L30 Tax=CG_Woesearch_02
50S ribosomal protein L30P id=5800042 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rpl30p; 50S ribosomal protein L30
rifcsphigho2_02_scaffold_19381_6
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(4189..5133)
-----------------
DNA (945bp)
protein (315aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 Tax=CG_Woesearch_02
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5042321 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S5
rifcsphigho2_02_scaffold_19381_7

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comp(5328..5969)
-----------------
DNA (642bp)
protein (214aa)
50S ribosomal protein L18P n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VRR5_9EURY
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
Ribosomal protein L18P
rifcsphigho2_02_scaffold_19381_8
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(6053..6514)
-----------------
DNA (462bp)
protein (154aa)
LSU ribosomal protein l19e; K02885 large subunit ribosomal protein L19e Tax=CG_Woesearch_02
50S ribosomal protein L19e id=5800045 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rpl19e; 50S ribosomal protein L19
rifcsphigho2_02_scaffold_19381_9

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comp(6543..7184)
-----------------
DNA (642bp)
protein (214aa)
50S ribosomal protein L32; K02912 large subunit ribosomal protein L32e id=5042318 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO46816.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
50S ribosomal protein L32e
rifcsphigho2_02_scaffold_19381_10

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comp(7250..7798)
-----------------
DNA (549bp)
protein (183aa)
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12197.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L9; K02933 large subunit ribosomal protein L6 id=5046855 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L6
rifcsphigho2_02_scaffold_19381_11

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comp(7848..8321)
-----------------
DNA (474bp)
protein (158aa)
30S ribosomal protein S8 {ECO:0000313|EMBL:AJS12198.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 id=5042316 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8
rifcsphigho2_02_scaffold_19381_12
AR11, Woesearchaeaota, DPANN, Archaea

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comp(8449..8583)
-----------------
DNA (135bp)
protein (45aa)
SSU ribosomal protein S14P
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14 Tax=AR11
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5042315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_02_scaffold_19381_13

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comp(8580..9125)
-----------------
DNA (546bp)
protein (182aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5042314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
rifcsphigho2_02_scaffold_19381_14
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(9163..9849)
-----------------
DNA (687bp)
protein (229aa)
SSU ribosomal protein s4e; K02987 small subunit ribosomal protein S4e Tax=AR11
30S ribosomal protein S4E; K02987 small subunit ribosomal protein S4e id=5042313 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S4e
rifcsphigho2_02_scaffold_19381_15

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comp(9937..10350)
-----------------
DNA (414bp)
protein (138aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372D201
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24P
rifcsphigho2_02_scaffold_19381_16

Not on your lists


comp(10362..10763)
-----------------
DNA (402bp)
protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl14p; 50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14 id=5042311 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14P
rifcsphigho2_02_scaffold_19381_17

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comp(10766..11221)
-----------------
DNA (456bp)
protein (152aa)
30S ribosomal protein S17P n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD91_METIK
30S ribosomal protein S17P {ECO:0000313|EMBL:AJS12202.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17
rifcsphigho2_02_scaffold_19381_18
Methanocaldococcus infernus, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(11270..11506)
-----------------
DNA (237bp)
protein (79aa)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|H
Ribonuclease P protein component 1 n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VRU4_METIM
ribonuclease P, Rpp29
rifcsphigho2_02_scaffold_19381_19
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(11542..11850)
-----------------
DNA (309bp)
protein (103aa)
translation initiation factor 1 (eif-1/sui1); K03113 translation initiation factor 1 Tax=RBG_13_Woesearchaeota_36_6_curated
translation initiation factor 1 (eIF-1/SUI1); K03113 translation initiation factor 1 id=5042308 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
translation initiation factor 1 (eif-1/sui1)
rifcsphigho2_02_scaffold_19381_20
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(11949..12173)
-----------------
DNA (225bp)
protein (75aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=CG_Woesearch_02
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 id=5042307 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L29
rifcsphigho2_02_scaffold_19381_21

Not on your lists


comp(12233..13075)
-----------------
DNA (843bp)
protein (281aa)
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps3p; 30S ribosomal protein S3P; K02982 small subunit ribosomal protein S3 id=5042306 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S3
rifcsphigho2_02_scaffold_19381_22

Not on your lists


comp(13123..13620)
-----------------
DNA (498bp)
protein (166aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 id=5042305 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L22P
rifcsphigho2_02_scaffold_19381_23

Not on your lists


comp(13746..14129)
-----------------
DNA (384bp)
protein (128aa)
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps19p; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 id=5042304 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
SSU ribosomal protein S15e (S19p)
rifcsphigho2_02_scaffold_19381_24

Not on your lists


comp(14161..14871)
-----------------
DNA (711bp)
protein (237aa)
50S ribosomal protein L2P {ECO:0000313|EMBL:AJS12206.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2 id=5800061 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rpl2p; 50S ribosomal protein L2
rifcsphigho2_02_scaffold_19381_25
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(15019..15279)
-----------------
DNA (261bp)
protein (87aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003624D48
50S ribosomal protein L23P Tax=AR15
50S ribosomal protein L23P
rifcsphigho2_02_scaffold_19381_26

Not on your lists


comp(15310..15741)
-----------------
DNA (432bp)
protein (144aa)
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS12207.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl4lp; 50S ribosomal protein L4P; K02930 large subunit ribosomal protein L4e id=5042301 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L4
Displaying 26 items

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