ggKbase home page

rifcsphigho2_02_scaffold_1556

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_1556_1
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

2..952
-----------------
DNA (951bp)
protein (317aa)
Tax=CG_Aenigma_01
rifcsphigho2_02_scaffold_1556_2

Not on your lists

1024..2976
-----------------
DNA (1953bp)
protein (651aa)
transglutaminase domain protein id=5049172 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Transglutaminase protein {ECO:0000313|EMBL:KHO45163.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Transglutaminase protein
rifcsphigho2_02_scaffold_1556_3
Chlamydia pneumoniae, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(3068..3310)
-----------------
DNA (243bp)
protein (81aa)
Histone H1-like protein HC2 n=1 Tax=Chlamydia pneumoniae RepID=HCT2_CHLPN
Hc2 nucleoprotein
Uncharacterized protein {ECO:0000313|EMBL:CRI49286.1}; TaxID=83558 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia pneumoniae
rifcsphigho2_02_scaffold_1556_4
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

3641..5455
-----------------
DNA (1815bp)
protein (605aa)
Uncharacterized protein n=4 Tax=Pyrococcus RepID=Q8U211_PYRFU id=5103802 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
ATPase; K06865 ATPase Tax=CG_Woesearch_02
hypothetical protein
rifcsphigho2_02_scaffold_1556_5
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

5510..6787
-----------------
DNA (1278bp)
protein (426aa)
serS; seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] Tax=CG_Woesearch_02
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J1L234_9EURY
rifcsphigho2_02_scaffold_1556_6
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

6813..7400
-----------------
DNA (588bp)
protein (196aa)
id=5047415 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
rifcsphigho2_02_scaffold_1556_7
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

7480..8550
-----------------
DNA (1071bp)
protein (357aa)
cell division control protein 6 Tax=CG_Woesearch_02
ORC1-type DNA replication protein id=5800648 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ORC1-type DNA replication protein
rifcsphigho2_02_scaffold_1556_8
unknown

Not on your lists

8854..8979
-----------------
DNA (126bp)
protein (42aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1556_9
unknown

Not on your lists

8976..9131
-----------------
DNA (156bp)
protein (52aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1556_10
Clostridium sp. CAG:433, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9149..9439
-----------------
DNA (291bp)
protein (97aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:433 RepID=R6YHV3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD28131.1}; TaxID=1262806 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
putative cytoplasmic protein
rifcsphigho2_02_scaffold_1556_11
unknown

Not on your lists

9382..9570
-----------------
DNA (189bp)
protein (63aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1556_12

Not on your lists

comp(9847..9999)
-----------------
DNA (153bp)
protein (51aa)
Uncharacterized protein id=5800244 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61575.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
hypothetical protein
rifcsphigho2_02_scaffold_1556_13
unknown

Not on your lists

10110..10400
-----------------
DNA (291bp)
protein (97aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1556_14

Not on your lists

comp(10407..11126)
-----------------
DNA (720bp)
protein (240aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO50524.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Peptidase M50 id=5041751 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_1556_15
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(11330..12043)
-----------------
DNA (714bp)
protein (238aa)
trab determinant protein Tax=CG_Woesearch_02
TraB family protein id=5049565 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
TraB family protein
rifcsphigho2_02_scaffold_1556_16
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(12040..13146)
-----------------
DNA (1107bp)
protein (369aa)
Predicted fibronectin-binding protein n=1 Tax=Thermococcus sibiricus (strain MM 739 / DSM 12597) RepID=C6A3I0_THESM
fibronectin-binding a domain protein Tax=CG_Woesearch_02
fibronectin-binding protein
rifcsphigho2_02_scaffold_1556_17
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(13118..13615)
-----------------
DNA (498bp)
protein (166aa)
adenylate kinase (EC:2.7.4.3) Tax=RBG_13_Woesearchaeota_36_6_curated
adenylate kinase (EC:2.7.4.3) id=5045728 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Adenylate kinase
rifcsphigho2_02_scaffold_1556_18

Not on your lists

comp(13769..15655)
-----------------
DNA (1887bp)
protein (629aa)
ABC transporter; K09686 antibiotic transport system permease protein id=5041890 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Antibiotic transport system permease protein {ECO:0000313|EMBL:KHO47318.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
ABC-2 type transporter
rifcsphigho2_02_scaffold_1556_19

Not on your lists

comp(15655..16707)
-----------------
DNA (1053bp)
protein (351aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036E2996
Antibiotic transport system ATP-binding protein {ECO:0000313|EMBL:KHO51088.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
ABC-type multidrug transport system, ATP-ase compoment
rifcsphigho2_02_scaffold_1556_20
GWA2_OP11_42_12, Amesbacteria, Microgenomates, Bacteria

Not on your lists

comp(16902..17558)
-----------------
DNA (657bp)
protein (219aa)
NUDIX hydrolase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TD79_9CHLR
NUDIX hydrolase {ECO:0000313|EMBL:KKS30942.1}; TaxID=1618356 species="Bacteria; Microgenomates.;" source="Microgenomates (Amesbacteria) bacterium GW2011_GWA2_42_12.;"
nudF1; NUDIX family hydrolase
rifcsphigho2_02_scaffold_1556_21
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(17584..18309)
-----------------
DNA (726bp)
protein (242aa)
isochorismatase hydrolase; K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
pncA; protein PncA (EC:3.5.1.19)
Isochorismatase hydrolase id=2010413 bin=GWB2_CP_45_9 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
rifcsphigho2_02_scaffold_1556_22
Methanococcus maripaludis, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(18316..19323)
-----------------
DNA (1008bp)
protein (336aa)
ADP-ribosylation/Crystallin J1 n=1 Tax=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) RepID=A4FYK5_METM5
ADP-ribosylation/crystallin J1
ADP-ribosylation/Crystallin J1 {ECO:0000313|EMBL:ABO35289.1}; TaxID=402880 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.;" source="Methanococcus mari
rifcsphigho2_02_scaffold_1556_23

Not on your lists

19810..20880
-----------------
DNA (1071bp)
protein (357aa)
hypothetical protein
Six-hairpin glycosidase-like id=5042279 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46777.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_02_scaffold_1556_24
R_RIF_OD1_07_47_27, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

20904..21557
-----------------
DNA (654bp)
protein (218aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EMI1_9BACT
SAM-dependent methyltransferase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_47_27_curated
type 11 methyltransferase
rifcsphigho2_02_scaffold_1556_25

Not on your lists

21554..21946
-----------------
DNA (393bp)
protein (131aa)
hypothetical protein id=5047440 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO45258.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
transporter protein
rifcsphigho2_02_scaffold_1556_26
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

21943..22293
-----------------
DNA (351bp)
protein (117aa)
hypothetical protein Tax=CG_Woesearch_02
permease id=5047441 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_1556_27
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

22324..22998
-----------------
DNA (675bp)
protein (225aa)
hypothetical protein; K09903 uridylate kinase [EC:2.7.4.22] Tax=CG_Woesearch_02
pyrH; uridylate kinase (EC:2.7.4.-)
Uncharacterized protein id=5800565 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_1556_28

Not on your lists

22998..23510
-----------------
DNA (513bp)
protein (171aa)
dCTP deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] id=96296 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
dCTP deaminase {ECO:0000256|SAAS:SAAS00054754}; EC=3.5.4.13 {ECO:0000256|SAAS:SAAS00054754};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
deoxycytidine triphosphate deaminase
rifcsphigho2_02_scaffold_1556_29
RIFOXYA2_FULL_Elusimicrobia_53_38_curated, Elusimicrobia, Bacteria

Not on your lists

comp(23507..24328)
-----------------
DNA (822bp)
protein (274aa)
Radical SAM domain protein n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RF06_DESPD
radical SAM protein Tax=RIFOXYA2_FULL_Elusimicrobia_53_38_curated
radical SAM protein
rifcsphigho2_02_scaffold_1556_30
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

24473..25003
-----------------
DNA (531bp)
protein (177aa)
hypothetical protein
id=5103346 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
Displaying items 1-30 of 44 in total

View Taxonomy