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rifcsphigho2_02_scaffold_2272

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_2272_1
unknown

Not on your lists

comp(1..216)
-----------------
DNA (216bp)
protein (72aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2272_2
Methanosarcina sp. 2.H.T.1A.15, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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268..576
-----------------
DNA (309bp)
protein (103aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000371FDBC
Uncharacterized protein {ECO:0000313|EMBL:KKG21618.1}; TaxID=1483596 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina s
hypothetical protein
rifcsphigho2_02_scaffold_2272_3
unknown

Not on your lists

578..922
-----------------
DNA (345bp)
protein (115aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000369F569
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TTB9_METAC Tax=AR20
hypothetical protein
rifcsphigho2_02_scaffold_2272_4
unknown

Not on your lists

comp(958..1152)
-----------------
DNA (195bp)
protein (65aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2272_5
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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1536..2366
-----------------
DNA (831bp)
protein (277aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000371A96B
site-specific recombinase XerD Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein
rifcsphigho2_02_scaffold_2272_6
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

2460..2795
-----------------
DNA (336bp)
protein (112aa)
ribonuclease P protein component 2 Tax=CG_Woesearch_02
Ribonuclease P protein component 2 id=5046930 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribonuclease P protein component 2
rifcsphigho2_02_scaffold_2272_7

Not on your lists

2812..3561
-----------------
DNA (750bp)
protein (250aa)
psmA; proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] id=5046929 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PsmA
Proteasome subunit alpha
rifcsphigho2_02_scaffold_2272_8
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists


3564..4265
-----------------
DNA (702bp)
protein (234aa)
Putative RNA-associated protein n=1 Tax=Pyrococcus sp. ST04 RepID=I3RFK8_9EURY
Predicted exosome subunit Tax=AR11
RNA-associated protein
rifcsphigho2_02_scaffold_2272_9
Flavobacterium sp. EM1321, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4266..4841
-----------------
DNA (576bp)
protein (192aa)
Scramblase family protein n=1 Tax=Flavobacterium branchiophilum (strain FL-15) RepID=G2YZT4_FLABF
Uncharacterized protein {ECO:0000313|EMBL:KDN53857.1}; TaxID=1492738 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp.
Scramblase family protein
rifcsphigho2_02_scaffold_2272_10

Not on your lists

4853..5578
-----------------
DNA (726bp)
protein (242aa)
rpr43; exosome RNA binding protein (EC:3.1.13.-); K03679 exosome complex component RRP4 id=5046927 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
putative exosome complex RNA-binding protein 1
rifcsphigho2_02_scaffold_2272_11
GWA2_OP11_46_7, Microgenomates, Bacteria

Not on your lists

5568..6281
-----------------
DNA (714bp)
protein (238aa)
Exosome complex exonuclease Rrp41 {ECO:0000313|EMBL:KKU44650.1}; TaxID=1618502 species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWA2_46_7.;"
Rph; exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 id=5046926 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
exosome complex exonuclease Rrp41
rifcsphigho2_02_scaffold_2272_12
GWA2_OP11_46_7, Microgenomates, Bacteria

Not on your lists

6281..7063
-----------------
DNA (783bp)
protein (261aa)
3'-5' exoribonuclease {ECO:0000313|EMBL:KKU44649.1}; TaxID=1618502 species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWA2_46_7.;"
Ribosomal RNA-processing protein RRP42 id=5800801 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Ribosomal RNA-processing protein RRP42
rifcsphigho2_02_scaffold_2272_13
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

7065..7298
-----------------
DNA (234bp)
protein (78aa)
DNA-directed RNA polymerase subunit K; K03055 DNA-directed RNA polymerase subunit K [EC:2.7.7.6] Tax=CG_Woesearch_02
DNA-directed RNA polymerase subunit K; K03055 DNA-directed RNA polymerase subunit K [EC:2.7.7.6] id=5045738 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
rifcsphigho2_02_scaffold_2272_14
GWA2_OP11_46_7, Microgenomates, Bacteria

Not on your lists

7304..7579
-----------------
DNA (276bp)
protein (92aa)
Uncharacterized protein n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LKV8_THEBM
Uncharacterized protein Tax=GWA2_OP11_46_7
Hypothetical protein
rifcsphigho2_02_scaffold_2272_15
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

7662..9101
-----------------
DNA (1440bp)
protein (480aa)
glucuronate isomerase (EC:5.3.1.12); K01812 glucuronate isomerase [EC:5.3.1.12] Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
glucuronate isomerase (EC:5.3.1.12)
Glucuronate isomerase id=4275944 bin=GWC2_Ignavibacteria_38_9 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
rifcsphigho2_02_scaffold_2272_16

Not on your lists

9152..9439
-----------------
DNA (288bp)
protein (96aa)
Chorismate mutase {ECO:0000313|EMBL:KHO54916.1}; EC=5.4.99.5 {ECO:0000313|EMBL:KHO54916.1};; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
Chorismate mutase n=1 Tax=Metallosphaera yellowstonensis MK1 RepID=H2C9K1_9CREN
chorismate mutase
rifcsphigho2_02_scaffold_2272_17
Parcubacteria bacterium GW2011_GWA2_46_9, Parcubacteria, Bacteria

Not on your lists

comp(9429..10409)
-----------------
DNA (981bp)
protein (327aa)
Putative tRNA pseudouridine synthase B {ECO:0000313|EMBL:KKU47144.1}; Flags: Fragment;; TaxID=1618838 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_46_9.;"
Probable tRNA pseudouridine synthase B id=5799607 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
putative tRNA pseudouridine synthase B
rifcsphigho2_02_scaffold_2272_18
unknown

Not on your lists

10531..10665
-----------------
DNA (135bp)
protein (45aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2272_19
unknown

Not on your lists

10656..10784
-----------------
DNA (129bp)
protein (43aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2272_20
unknown

Not on your lists

10791..12275
-----------------
DNA (1485bp)
protein (495aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2272_21
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(12504..13067)
-----------------
DNA (564bp)
protein (188aa)
RPL31A; 50S ribosomal protein L31; K02910 large subunit ribosomal protein L31e Tax=CG_Woesearch_01
RPL31A; 50S ribosomal protein L31; K02910 large subunit ribosomal protein L31e id=5049181 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ribosomal protein L31e
rifcsphigho2_02_scaffold_2272_22
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(13153..13326)
-----------------
DNA (174bp)
protein (58aa)
hypothetical protein
id=5103297 Tax=CG_Woesearch_03
id=5800694 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_2272_23

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comp(13328..13660)
-----------------
DNA (333bp)
protein (111aa)
DNA-binding protein; K06875 programmed cell death protein 5 id=5049180 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Programmed cell death protein 5 {ECO:0000313|EMBL:KHO45171.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_02_scaffold_2272_24
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(13653..14240)
-----------------
DNA (588bp)
protein (196aa)
30S ribosomal protein S19; K02966 small subunit ribosomal protein S19e Tax=AR11
30S ribosomal protein S19; K02966 small subunit ribosomal protein S19e id=5049179 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ribosomal protein S19e
rifcsphigho2_02_scaffold_2272_25

Not on your lists

14326..17241
-----------------
DNA (2916bp)
protein (972aa)
ATP-dependent helicase Lhr and Lhr-like protein helicase {ECO:0000313|EMBL:KHO45167.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO45167.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
ATP dependent helicase, lhr family; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] id=5049176 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DEAD/H associated protein
rifcsphigho2_02_scaffold_2272_26
R_WOR_2_41_12, WOR-2, Bacteria

Not on your lists

17310..17864
-----------------
DNA (555bp)
protein (185aa)
coaE; dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=RIFCSPLOWO2_01_FULL_WOR_2_41_12_curated
coaE; dephosphocoenzyme A kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PRM2_CLOSD
rifcsphigho2_02_scaffold_2272_27
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

17866..18348
-----------------
DNA (483bp)
protein (161aa)
Phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
Phosphopantetheine adenylyltransferase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S326_THEOJ
rifcsphigho2_02_scaffold_2272_28
CG_Micra_01, Micraarchaeota, Archaea

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18511..18756
-----------------
DNA (246bp)
protein (82aa)
hypothetical protein Tax=CG_Micra_01
hypothetical protein id=5047352 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
rifcsphigho2_02_scaffold_2272_29
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

18749..19018
-----------------
DNA (270bp)
protein (90aa)
plasmid stabilization system protein Tax=CG_Woesearch_02
hypothetical protein id=5044608 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Addiction module toxin, RelE/StbE family
rifcsphigho2_02_scaffold_2272_30
Rivularia sp. PCC 7116, Rivularia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(19151..19828)
-----------------
DNA (678bp)
protein (226aa)
Uncharacterized protein n=1 Tax=Rivularia sp. PCC 7116 RepID=K9R5G7_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY52696.1}; TaxID=373994 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Rivularia.;" source="Rivularia sp. PCC 7116.;"
Displaying items 1-30 of 40 in total

View Taxonomy