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rifcsphigho2_02_scaffold_6663

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_6663_1

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comp(6..2594)
-----------------
DNA (2589bp)
protein (863aa)
PREDICTED: mucin-5AC-like, partial n=1 Tax=Oreochromis niloticus RepID=UPI000394484B
Uncharacterized protein {ECO:0000313|EMBL:KKL97947.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
rifcsphigho2_02_scaffold_6663_2
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(2629..3468)
-----------------
DNA (840bp)
protein (280aa)
Uncharacterized membrane protein Tax=CG_Woesearch_01
Uncharacterized membrane protein id=5800075 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_6663_3

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comp(3475..5943)
-----------------
DNA (2469bp)
protein (823aa)
Marine sediment metagenome DNA, contig: S03H2_L03654 {ECO:0000313|EMBL:GAH44446.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
hypothetical protein
rifcsphigho2_02_scaffold_6663_4
Halorubrum aidingense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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6102..6599
-----------------
DNA (498bp)
protein (166aa)
Peptidase S26B, signal peptidase n=1 Tax=Halorubrum aidingense JCM 13560 RepID=M0P6I1_9EURY
Peptidase S26B, signal peptidase {ECO:0000313|EMBL:EMA65762.1}; TaxID=1230454 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum aidingense
rifcsphigho2_02_scaffold_6663_5
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

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6880..7818
-----------------
DNA (939bp)
protein (313aa)
phoU; transcriptional regulator Tax=GWA2_WOR_2_47_8_curated
Putative uncharacterized protein id=5799582 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
transcriptional regulator
rifcsphigho2_02_scaffold_6663_6
unknown

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7921..8700
-----------------
DNA (780bp)
protein (260aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6663_7
AR15, Woesearchaeaota, DPANN, Archaea

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8812..9258
-----------------
DNA (447bp)
protein (149aa)
30S ribosomal protein S15/S13e id=5799745 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S15/S13e Tax=AR15
rps15p; 30S ribosomal protein S15P
rifcsphigho2_02_scaffold_6663_8
unknown

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9405..10418
-----------------
DNA (1014bp)
protein (338aa)

This feature has no annotations

rifcsphigho2_02_scaffold_6663_9
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(10472..10693)
-----------------
DNA (222bp)
protein (74aa)
hypothetical protein
regulatory protein MarR Tax=CG_Woesearch_02
regulatory protein MarR id=5043998 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_02_scaffold_6663_10
CG_Woesearch_02, Woesearchaeota, Archaea

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10882..12744
-----------------
DNA (1863bp)
protein (621aa)
DNA repair helicase rad3 Tax=CG_Woesearch_02
ATP dependent helicase id=5799755 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ATP dependent helicase
rifcsphigho2_02_scaffold_6663_11

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comp(12909..13079)
-----------------
DNA (171bp)
protein (57aa)
Marine sediment metagenome DNA, contig: S01H1_S21443 {ECO:0000313|EMBL:GAG26901.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_02_scaffold_6663_12
CG_Woesearch_01, Woesearchaeota, Archaea

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13175..13423
-----------------
DNA (249bp)
protein (83aa)
id=5046822 Tax=CG_Woesearch_01
rifcsphigho2_02_scaffold_6663_13
RHI_RIF_OD1_06_38_11, RIF-OD1-6, Parcubacteria, Bacteria

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comp(13424..13840)
-----------------
DNA (417bp)
protein (139aa)
NUDIX hydrolase n=1 Tax=Thaumarchaeota archaeon N4 RepID=V6AUG2_9ARCH
Nudt; Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] (Diadenosine 5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Ap4Aase) (Nucleoside diphosph
NTP pyrophosphohydrolase
rifcsphigho2_02_scaffold_6663_14
CG_Ignavi_02, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(13837..15027)
-----------------
DNA (1191bp)
protein (397aa)
Major facilitator superfamily MFS_1 n=1 Tax=Chlorobium limicola (strain DSM 245 / NBRC 103803) RepID=B3EDE7_CHLL2
Major facilitator superfamily permease; K06902 MFS transporter, UMF1 family Tax=CG_Ignavi_02
major facilitator superfamily protein
rifcsphigho2_02_scaffold_6663_15

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15065..15856
-----------------
DNA (792bp)
protein (264aa)
Marine sediment metagenome DNA, contig: S01H1_S30916 {ECO:0000313|EMBL:GAG35537.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
tRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase id=5800001 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
trm1; N(2),N(2)-dimethylguanosine tRNA methyltransferase
Displaying 15 items

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