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rifcsphigho2_02_scaffold_13372

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_13372_1
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(273..965)
-----------------
DNA (693bp)
protein (231aa)
alias=gwa2_scaffold_521_40 Tax=RBG_13_Pacearchaeota_36_9_curated
alias=gwa2_scaffold_521_40 id=18248230 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
rifcsphigho2_02_scaffold_13372_2
Caenorhabditis brenneri, Caenorhabditis, Rhabditida, Chromadorea, Nematoda, Metazoa

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1074..1907
-----------------
DNA (834bp)
protein (278aa)
Putative uncharacterized protein n=1 Tax=Caenorhabditis brenneri RepID=G0P780_CAEBE
Putative uncharacterized protein {ECO:0000313|EMBL:EGT46848.1}; TaxID=135651 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorha
TonB family protein
rifcsphigho2_02_scaffold_13372_3
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(1923..2900)
-----------------
DNA (978bp)
protein (326aa)
Transcriptional regulator n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TC38_9EURY
AsnC family transcriptional regulator Tax=RBG_13_Pacearchaeota_36_9_curated
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
rifcsphigho2_02_scaffold_13372_4
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists

2995..4446
-----------------
DNA (1452bp)
protein (484aa)
hypothetical protein; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] Tax=CG_Micra_06
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI000361803D
hypothetical protein
rifcsphigho2_02_scaffold_13372_5
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

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4649..6049
-----------------
DNA (1401bp)
protein (467aa)
Tax=RBG_16_Spirochaetes_49_21_curated
rifcsphigho2_02_scaffold_13372_6

Not on your lists

comp(6054..8225)
-----------------
DNA (2172bp)
protein (724aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO52160.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein id=5048511 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_13372_7
CG_Woesearch_03, Woesearchaeota, Archaea

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comp(8227..10503)
-----------------
DNA (2277bp)
protein (759aa)
hypothetical protein Tax=CG_Woesearch_03
hypothetical protein id=5043756 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_13372_8

Not on your lists

comp(10496..10648)
-----------------
DNA (153bp)
protein (51aa)
Marine sediment metagenome DNA, contig: S01H1_S33064 {ECO:0000313|EMBL:GAG30110.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_02_scaffold_13372_9

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10761..11318
-----------------
DNA (558bp)
protein (186aa)
hypothetical protein
id=5048513 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45547.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_02_scaffold_13372_10

Not on your lists

11541..12179
-----------------
DNA (639bp)
protein (213aa)
hypothetical protein id=5042245 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46743.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_02_scaffold_13372_11

Not on your lists

comp(12246..12842)
-----------------
DNA (597bp)
protein (199aa)
seg id=5043752 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO47068.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
rifcsphigho2_02_scaffold_13372_12

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comp(12846..13466)
-----------------
DNA (621bp)
protein (207aa)
seg id=5043751 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO47067.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
rifcsphigho2_02_scaffold_13372_13
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(13789..14370)
-----------------
DNA (582bp)
protein (194aa)
hypothetical protein
seg id=5043750 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR11
rifcsphigho2_02_scaffold_13372_14

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14457..15020
-----------------
DNA (564bp)
protein (188aa)
hypothetical protein id=5047338 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54116.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
hypothetical protein
rifcsphigho2_02_scaffold_13372_15
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15033..15605
-----------------
DNA (573bp)
protein (191aa)
metal dependent phosphohydrolase; K07023 putative hydrolases of HD superfamily Tax=RBG_16_Deltaproteobacteria_47_11_curated
metal dependent phosphohydrolase; K07023 putative hydrolases of HD superfamily id=5042065 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
metal dependent phosphohydrolase
rifcsphigho2_02_scaffold_13372_16
unknown

Not on your lists

comp(15568..16053)
-----------------
DNA (486bp)
protein (162aa)

This feature has no annotations

rifcsphigho2_02_scaffold_13372_17
unknown

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comp(16075..16341)
-----------------
DNA (267bp)
protein (89aa)

This feature has no annotations

rifcsphigho2_02_scaffold_13372_18
unknown

Not on your lists

comp(16328..16720)
-----------------
DNA (393bp)
protein (131aa)

This feature has no annotations

rifcsphigho2_02_scaffold_13372_19
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


17014..18546
-----------------
DNA (1533bp)
protein (511aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA(Asp/Asn) ligase {ECO:0000255|HAMAP-Rule:MF_00044}; EC=6.1.1.23 {ECO:0000255|HAMAP-Rule:MF_00044};; Aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000255|
Aspartate--tRNA ligase n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=SYD_THETN
Displaying 19 items

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